JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2044.1 NAC007 Arabidopsis thaliana GCM domain factors NAC
MA2045.1 NAC031 Arabidopsis thaliana GCM domain factors NAC
MA2046.1 NAC035 Arabidopsis thaliana GCM domain factors NAC
MA2047.1 NAC037 Arabidopsis thaliana GCM domain factors NAC
MA2048.1 NAC045 Arabidopsis thaliana GCM domain factors NAC
MA2049.1 NAC053 Arabidopsis thaliana GCM domain factors NAC
MA2050.1 NAC101 Arabidopsis thaliana GCM domain factors NAC
MA2051.1 NAC68 Arabidopsis thaliana GCM domain factors NAC
MA2052.1 ZAT6 Arabidopsis thaliana C2H2 zinc finger factors
MA2053.1 NAC105 Arabidopsis thaliana GCM domain factors NAC
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.