JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2034.1 NAC057 Arabidopsis thaliana GCM domain factors NAC
MA2035.1 NAC075 Arabidopsis thaliana GCM domain factors NAC
MA2036.1 NAC076 Arabidopsis thaliana GCM domain factors NAC
MA2037.1 NAC096 Arabidopsis thaliana GCM domain factors NAC
MA2038.1 NAC103 Arabidopsis thaliana GCM domain factors NAC
MA2039.1 ASIL2 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA2040.1 AT5G05550 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA2041.1 MYB13 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2042.1 MYB58 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2043.1 NAC004 Arabidopsis thaliana GCM domain factors NAC
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.