JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA2014.1 BAM8 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2015.1 NAC002 Arabidopsis thaliana beta-Hairpin exposed by an alpha/beta-scaffold NAC
MA2016.1 GRF6 Arabidopsis thaliana C3H zinc finger factors GRF
MA2017.1 JUB1 Arabidopsis thaliana GCM domain factors NAC
MA2018.1 NAC69 Arabidopsis thaliana GCM domain factors NAC
MA2019.1 HSFA1B Arabidopsis thaliana Heat shock factors
MA2020.1 HSFB4 Arabidopsis thaliana Heat shock factors
MA2021.1 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.1 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2023.1 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.