JASPAR CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1922.1 Tbx2/3 Ciona intestinalis T-Box factors TBX2-related factors
MA1923.1 Tcf3-4-12 Ciona intestinalis Basic helix-loop-helix factors (bHLH) E2A
MA1924.1 Tlx Ciona intestinalis Homeo domain factors NK
MA1925.1 Uncx-b Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1926.1 Usf Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1927.1 YY1-2 Ciona intestinalis C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1928.1 BNC2 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1929.1 CTCF Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1930.1 CTCF Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1931.1 ELK1::HOXA1 Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::HOX-related factors
MA1932.1 ELK1::HOXB13 Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::HOX-related factors
MA1933.1 ELK1::SREBF2 Homo sapiens Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::bHLH-ZIP
MA1934.1 ERF::FIGLA Homo sapiens Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::Tal-related
MA1935.1 ERF::FOXI1 Homo sapiens Tryptophan cluster factors::Fork head/winged helix factors Ets-related::FOX
MA1936.1 ERF::FOXO1 Homo sapiens Tryptophan cluster factors::Fork head/winged helix factors Ets-related::FOX
MA1937.1 ERF::HOXB13 Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::HOX-related factors
MA1938.1 ERF::NHLH1 Homo sapiens Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::Tal-related
MA1939.1 ERF::SREBF2 Homo sapiens Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::bHLH-ZIP
MA1940.1 ETV2::DRGX Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::Paired-related HD factors
MA1941.1 ETV2::FIGLA Homo sapiens Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::Tal-related
MA1942.1 ETV2::FOXI1 Homo sapiens Tryptophan cluster factors::Fork head/winged helix factors Ets-related::FOX
MA1943.1 ETV2::HOXB13 Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::HOX-related factors
MA1944.1 ETV5::DRGX Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::Paired-related HD factors
MA1945.1 ETV5::FIGLA Homo sapiens Tryptophan cluster factors::Basic helix-loop-helix factors (bHLH) Ets-related::Tal-related
MA1946.1 ETV5::FOXI1 Homo sapiens Tryptophan cluster factors::Fork head/winged helix factors Ets-related::FOX
MA1947.1 ETV5::FOXO1 Homo sapiens Tryptophan cluster factors::Fork head/winged helix factors Ets-related::FOX
MA1948.1 ETV5::HOXA2 Homo sapiens Tryptophan cluster factors::Homeo domain factors Ets-related::HOX-related factors
MA1949.1 FLI1::DRGX Homo sapiens Homeo domain factors::Tryptophan cluster factors Paired-related HD factors::Ets-related
MA1950.1 FLI1::FOXI1 Homo sapiens Tryptophan cluster factors::Fork head/winged helix factors Ets-related::FOX
MA1951.1 FOS Homo sapiens Basic leucine zipper factors (bZIP) Fos-related
MA1952.1 FOXJ2::ELF1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1953.1 FOXO1::ELF1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1954.1 FOXO1::ELK1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1955.1 FOXO1::ELK3 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1956.1 FOXO1::FLI1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1957.1 HOXB2::ELK1 Homo sapiens Homeo domain factors::Tryptophan cluster factors HOX::Ets-related
MA1958.1 HOXD12::ELK1 Homo sapiens Homeo domain factors::Tryptophan cluster factors HOX::Ets-related
MA1959.1 KLF7 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1960.1 MGA::EVX1 Homo sapiens T-Box factors::Homeo domain factors TBX6-related factors::HOX
MA1961.1 PATZ1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1962.1 POU2F1::SOX2 Homo sapiens Homeo domain factors::High-mobility group (HMG) domain factors POU domain factors::SOX-related factors
MA1963.1 SATB1 Homo sapiens Homeo domain factors HD-CUT
MA1964.1 SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1965.1 SP5 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1966.1 TFAP4::ETV1 Homo sapiens Basic helix-loop-helix factors (bHLH)::Tryptophan cluster factors bHLH-ZIP::Ets-related
MA1967.1 TFAP4::FLI1 Homo sapiens Basic helix-loop-helix factors (bHLH)::Tryptophan cluster factors bHLH-ZIP::Ets-related
MA1968.1 TFCP2 Homo sapiens Grainyhead domain factors CP2-related factors
MA1969.1 THRA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1970.1 TRPS1 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA1971.1 ZBED2 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA1972.1 ZFP14 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1973.1 ZKSCAN3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1974.1 ZNF211 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1975.1 ZNF214 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1976.1 ZNF320 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1977.1 ZNF324 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1978.1 ZNF354A Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1979.1 ZNF416 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1980.1 ZNF418 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1981.1 ZNF530 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1982.1 ZNF574 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1983.1 ZNF582 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1984.1 ZNF667 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1985.1 ZNF669 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1986.1 ZNF692 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1987.1 ZNF701 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1988.1 Atf3 Mus musculus Basic leucine zipper factors (bZIP) Fos-related
MA1989.1 Bcl11B Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1990.1 Gli1 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1991.1 Hnf1A Mus musculus Homeo domain factors POU domain factors
MA1992.1 Ikzf3 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1993.1 Neurod2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1994.1 Nkx2-1 Mus musculus Homeo domain factors NK
MA1995.1 Npas4 Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA1996.1 Nr1H2 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1997.1 Olig2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1998.1 Prdm14 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1999.1 Prdm5 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2001.1 Six4 Mus musculus Homeo domain factors HD-SINE
MA2002.1 Zfp335 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2003.1 NKX2-4 Homo sapiens Homeo domain factors NK
MA2005.1 NAC016 Arabidopsis thaliana GCM domain factors NAC
MA2006.1 NAC020 Arabidopsis thaliana GCM domain factors NAC
MA2007.1 MYB107 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2008.1 MYB99 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2009.1 NAC010 Arabidopsis thaliana GCM domain factors NAC
MA2010.1 SMB Arabidopsis thaliana GCM domain factors NAC
MA2011.1 ERF010 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2012.1 ERF023 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2013.1 ERF115 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2014.1 BAM8 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2015.1 NAC002 Arabidopsis thaliana beta-Hairpin exposed by an alpha/beta-scaffold NAC
MA2016.1 GRF6 Arabidopsis thaliana C3H zinc finger factors GRF
MA2017.1 JUB1 Arabidopsis thaliana GCM domain factors NAC
MA2018.1 NAC69 Arabidopsis thaliana GCM domain factors NAC
MA2019.1 HSFA1B Arabidopsis thaliana Heat shock factors
MA2020.1 HSFB4 Arabidopsis thaliana Heat shock factors
MA2021.1 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.1 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2023.1 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
Showing 100 profiles of page 24 from 25 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.