JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1902.1 NFkb Ciona intestinalis Rel homology region (RHR) factors NF-kappaB-related factors
MA1903.1 Nk-1 Ciona intestinalis Homeo domain factors NK
MA1904.1 Nk-3 Ciona intestinalis Homeo domain factors NK
MA1905.1 Nkx3 Ciona intestinalis Homeo domain factors NK
MA1906.1 Noto Ciona intestinalis Homeo domain factors NK
MA1907.1 Otp Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1908.1 Otx Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1909.1 Prop Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1910.1 Rax Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1911.1 Rel Ciona intestinalis Rel homology region (RHR) factors NF-kappaB-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.