JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1882.1 Hnf1 Ciona intestinalis Homeo domain factors POU domain factors
MA1883.1 Hox1 Ciona intestinalis Homeo domain factors HOX
MA1884.1 Hox3 Ciona intestinalis Homeo domain factors HOX
MA1885.1 Hox4 Ciona intestinalis Homeo domain factors HOX
MA1886.1 Hox5 Ciona intestinalis Homeo domain factors HOX
MA1887.1 Hsf1-2-4 Ciona intestinalis Heat shock factors HSF factors
MA1888.1 Irf-b Ciona intestinalis Tryptophan cluster factors Interferon-regulatory factors
MA1889.1 Isx Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1890.1 Klf15 Ciona intestinalis C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1891.1 Klf3/8/12 Ciona intestinalis C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 227 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.