JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1832.1 Zm00001d002364 Zea mays AP2/EREBP ERF/DREB
MA1833.1 Zm00001d049364 Zea mays AP2/EREBP ERF/DREB
MA1834.1 Zm00001d034298 Zea mays Basic helix-loop-helix factors (bHLH)
MA1835.1 TFLG2-Zm00001d042777 Zea mays Basic leucine zipper factors (bZIP) Group D
MA1836.1 dsx Drosophila melanogaster
MA1837.1 Elba1 Drosophila melanogaster
MA1838.1 Elba2 Drosophila melanogaster
MA1839.1 GATAd Drosophila melanogaster Other C4 zinc finger-type factors C4-GATA-related
MA1840.1 gcm Drosophila melanogaster GCM domain factors GCM
MA1841.1 kn Drosophila melanogaster Rel homology region (RHR) factors EBF-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.