JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1748.1 DREB1F Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1749.1 E2FC Arabidopsis thaliana Fork head/winged helix factors E2F
MA1750.1 E2FE Arabidopsis thaliana Fork head/winged helix factors E2F
MA1751.1 EIL3 Arabidopsis thaliana EIL
MA1752.1 ERF025 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1753.1 ERF057 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1754.1 ERF073 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1755.1 GATA4 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1756.1 GRF9 Arabidopsis thaliana CH3 GRF
MA1757.1 HDG7 Arabidopsis thaliana Homeo domain factors HD-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.