JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1677.1 NAC078 Arabidopsis thaliana GCM domain factors NAC
MA1678.1 NTL8 Arabidopsis thaliana GCM domain factors NAC
MA1678.2 NTL8 Arabidopsis thaliana GCM domain factors NAC
MA1679.1 RAP2-1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1681.1 SRM1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1682.1 TCX3 Arabidopsis thaliana CPP
MA1683.1 FOXA3 Homo sapiens Fork head/winged helix factors FOX
MA1684.1 Foxn1 Mus musculus Fork head/winged helix factors FOX
MA1685.1 ARF10 Zea mays B3 ARF
MA1686.1 ARF13 Zea mays B3 ARF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.