JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1517.1 KLF6 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1518.1 LHX1 Homo sapiens Homeo domain factors HD-LIM
MA1518.2 Lhx1 Mus musculus Homeo domain factors HD-LIM
MA1519.1 LHX5 Homo sapiens Homeo domain factors HD-LIM
MA1520.1 MAF Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1521.1 MAFA Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1522.1 MAZ Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1523.1 MSANTD3 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA1524.1 MSGN1 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1524.2 Msgn1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1525.1 NFATC4 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA1525.2 NFATC4 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA1527.1 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA1528.1 NFIX Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA1529.1 NHLH2 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1530.1 NKX6-3 Homo sapiens Homeo domain factors NK
MA1531.1 NR1D1 Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1532.1 NR1D2 Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1532.2 NR1D2 Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1533.1 NR1I2 Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1534.1 NR1I3 Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1535.1 NR2C1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1536.1 NR2C2 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1537.1 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1538.1 NR2F1 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1539.1 NR2F6 Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1540.1 NR5A1 Homo sapiens Nuclear receptors with C4 zinc fingers FTZF1related(NR5A)
MA1540.2 NR5A1 Mus musculus Nuclear receptors with C4 zinc fingers FTZF1related(NR5A)
MA1541.1 NR6A1 Homo sapiens Nuclear receptors with C4 zinc fingers GCNF-related receptors (NR6)
MA1542.1 OSR1 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1544.1 OVOL1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1545.1 OVOL2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1546.1 PAX3 Homo sapiens Paired box factors Paired plus homeo domain
MA1547.1 PITX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA1547.2 PITX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA1548.1 PLAGL2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1549.1 POU6F1 Homo sapiens Homeo domain factors POU domain factors
MA1550.1 PPARD Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1552.1 RARB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1553.1 RARG Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1554.1 RFX7 Homo sapiens Fork head/winged helix factors RFX-related factors
MA1555.1 RXRB Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1556.1 RXRG Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1557.1 SMAD5 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1558.1 SNAI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1559.1 SNAI3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1560.1 SOHLH2 Homo sapiens Basic helix-loop-helix factors (bHLH) PAS domain factors
MA1561.1 SOX12 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA1562.1 SOX14 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA1563.1 SOX18 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA1563.2 SOX18 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA1564.1 SP9 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1565.1 TBX18 Homo sapiens T-Box factors TBX1-related factors
MA1566.1 TBX3 Homo sapiens T-Box factors TBX2-related factors
MA1566.2 TBX3 Homo sapiens T-Box factors TBX2-related factors
MA1567.1 TBX6 Homo sapiens T-Box factors TBX6-related factors
MA1567.2 Tbx6 Mus musculus T-Box factors TBX6-related factors
MA1568.1 TCF21 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1569.1 TFAP2E Homo sapiens Basic helix-span-helix factors (bHSH) AP-2
MA1570.1 TFAP4 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1571.1 TGIF2LX Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA1572.1 TGIF2LY Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA1573.1 THAP11 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA1573.2 Thap11 Mus musculus C2CH THAP-type zinc finger factors THAP-related factors
MA1574.1 THRB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1575.1 THRB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1576.1 THRB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1577.1 TLX2 Homo sapiens Homeo domain factors NK
MA1578.1 VEZF1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1579.1 ZBTB26 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1580.1 ZBTB32 Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1581.1 ZBTB6 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1583.1 ZFP57 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1584.1 ZIC5 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1585.1 ZKSCAN1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1587.1 ZNF135 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1588.1 ZNF136 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1589.1 ZNF140 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1592.1 ZNF274 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1593.1 ZNF317 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1594.1 ZNF382 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1596.1 ZNF460 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1597.1 ZNF528 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1599.1 ZNF682 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1600.1 ZNF684 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1601.1 ZNF75D Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1601.2 ZNF75D Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1602.1 ZSCAN29 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1603.1 Dmrt1 Mus musculus DM-type intertwined zinc finger factors DMRT factors
MA1604.1 Ebf2 Mus musculus Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA1606.1 Foxf1 Mus musculus Fork head/winged helix factors FOX
MA1607.1 Foxl2 Mus musculus Fork head/winged helix factors FOX
MA1608.1 Isl1 Mus musculus Homeo domain factors HD-LIM
MA1615.1 Plagl1 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1616.1 Prdm15 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1618.1 Ptf1a Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1619.1 Ptf1A Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1620.1 Ptf1A Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1621.1 Rbpjl Mus musculus Rel homology region (RHR) factors CSL-related factors
MA1623.1 Stat2 Mus musculus STAT domain factors STAT factors
Showing 100 profiles of page 20 from 25 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.