JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0005.2 AG Arabidopsis thaliana MADS box factors MIKC
MA0006.1 Ahr::Arnt Mus musculus Basic helix-loop-helix factors (bHLH)::Basic helix-loop-helix factors (bHLH) PAS domain factors::PAS domain factors
MA0007.1 Ar Rattus rattus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0007.2 AR Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0007.3 Ar Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0008.1 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0008.2 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0008.3 HAT5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0009.1 Tbxt Mus musculus T-Box factors Brachyury-related factors
MA0009.2 TBXT Homo sapiens T-Box factors Brachyury-related factors
Showing 10 profiles of page 2 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.