JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1544.1 OVOL1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1545.1 OVOL2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1546.1 PAX3 Homo sapiens Paired box factors Paired plus homeo domain
MA1547.1 PITX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA1547.2 PITX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA1548.1 PLAGL2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1549.1 POU6F1 Homo sapiens Homeo domain factors POU domain factors
MA1550.1 PPARD Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1552.1 RARB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1553.1 RARG Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
Showing 10 profiles of page 194 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.