JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0093.2 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0093.3 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0094.1 Ubx Drosophila melanogaster Homeo domain factors HOX
MA0094.2 Ubx Drosophila melanogaster Homeo domain factors HOX
MA0095.1 YY1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.2 YY1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.3 Yy1 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0096.1 bZIP910 Antirrhinum majus Basic leucine zipper factors (bZIP) Group S
MA0097.1 bZIP911 Antirrhinum majus Basic leucine zipper factors (bZIP) Group S
MA0098.1 ETS1 Homo sapiens Tryptophan cluster factors Ets-related
Showing 10 profiles of page 18 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.