JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1391.2 MYB33 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1392.1 MYB98 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1392.2 MYB98 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1393.1 MYB70 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1393.2 MYB70 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1394.1 MYB73 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1394.2 MYB73 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1396.1 GATA6 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1397.1 AT1G74840 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1398.1 KUA1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
Showing 10 profiles of page 179 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.