JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1302.1 WRKY65 Arabidopsis thaliana GCM domain factors WRKY
MA1303.1 WRKY22 Arabidopsis thaliana GCM domain factors WRKY
MA1304.1 WRKY59 Arabidopsis thaliana GCM domain factors WRKY
MA1305.1 WRKY55 Arabidopsis thaliana GCM domain factors WRKY
MA1306.1 WRKY11 Arabidopsis thaliana GCM domain factors WRKY
MA1307.1 WRKY31 Arabidopsis thaliana GCM domain factors WRKY
MA1307.2 WRKY31 Arabidopsis thaliana GCM domain factors WRKY
MA1308.1 WRKY70 Arabidopsis thaliana GCM domain factors WRKY
MA1309.1 WRKY3 Arabidopsis thaliana GCM domain factors WRKY
MA1310.1 WRKY42 Arabidopsis thaliana GCM domain factors WRKY
Showing 10 profiles of page 169 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.