JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1213.1 ATHB-21 Arabidopsis thaliana Homeo domain factors::Homeo domain factors HD-ZIP::PLINC
MA1213.2 ZHD3 Arabidopsis thaliana Homeo domain factors PLINC
MA1214.1 ATHB-40 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1215.1 ATHB-53 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1218.1 DREB1D Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1219.1 ERF011 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1219.2 ERF011 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1220.1 TINY Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1221.1 RAP2-6 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1222.1 ERF014 Arabidopsis thaliana AP2/EREBP ERF/DREB
Showing 10 profiles of page 160 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.