JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0530.1 cnc::maf-S Drosophila melanogaster Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0531.1 CTCF Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0532.1 Stat92E Drosophila melanogaster STAT domain factors STAT factors
MA0533.1 su(Hw) Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0534.1 EcR::usp Drosophila melanogaster Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
MA0535.1 Mad Drosophila melanogaster SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0536.1 pnr Drosophila melanogaster Other C4 zinc finger-type factors C4-GATA-related
MA0537.1 blmp-1 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0538.1 daf-12 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA0540.1 dpy-27 Caenorhabditis elegans
MA0541.1 efl-1 Caenorhabditis elegans Fork head/winged helix factors E2F
MA0542.1 elt-3 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA0543.1 eor-1 Caenorhabditis elegans C2H2 zinc finger factors
MA0544.1 snpc-4 Caenorhabditis elegans Tryptophan cluster factors Myb/SANT domain factors
MA0545.1 hlh-1 Caenorhabditis elegans Basic helix-loop-helix factors (bHLH)
MA0546.1 pha-4 Caenorhabditis elegans Fork head/winged helix factors FOX
MA0547.1 skn-1 Caenorhabditis elegans Basic leucine zipper factors (bZIP)
MA0548.1 AGL15 Arabidopsis thaliana MADS box factors MIKC
MA0548.2 AGL15 Arabidopsis thaliana MADS box factors MIKC
MA0549.1 BZR2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA0550.1 BZR1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA0550.2 BZR1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA0551.1 HY5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group H
MA0552.1 PIF1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0553.1 SMZ Arabidopsis thaliana AP2/EREBP AP2
MA0554.1 SOC1 Arabidopsis thaliana MADS box factors MIKC
MA0555.1 SVP Arabidopsis thaliana MADS box factors MIKC
MA0556.1 AP3 Arabidopsis thaliana MADS box factors MIKC
MA0557.1 FHY3 Arabidopsis thaliana GCM domain factors WRKY-like_FRS/FRF
MA0558.1 FLC Arabidopsis thaliana MADS box factors MIKC
MA0559.1 PI Arabidopsis thaliana MADS box factors MIKC
MA0560.1 PIF3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0561.1 PIF4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0562.1 PIF5 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0563.1 SEP3 Arabidopsis thaliana MADS box factors MIKC
MA0564.1 ABI3 Arabidopsis thaliana B3 ABI3
MA0565.1 FUS3 Arabidopsis thaliana B3 ABI3
MA0565.2 FUS3 Arabidopsis thaliana B3 ABI3
MA0566.1 MYC2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0567.1 ERF1B Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0568.1 MYC3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0569.1 MYC4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0570.1 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0570.2 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0571.1 ANT Arabidopsis thaliana AP2/EREBP AP2
MA0573.1 ATHB-9 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0574.1 MYB15 Arabidopsis thaliana Tryptophan cluster factors Myb
MA0575.1 MYB77 Arabidopsis thaliana Tryptophan cluster factors Myb
MA0576.1 RAX3 Arabidopsis thaliana Tryptophan cluster factors Myb
MA0577.1 SPL3 Arabidopsis thaliana C2H2 zinc finger factors SBP
Showing 50 profiles of page 16 from 49 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.