JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1193.1 AT2G38090 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1194.1 AT3G10580 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1195.1 AT5G56840 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1196.1 AT5G05790 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1197.1 CAMTA1 Arabidopsis thaliana CAMTA
MA1198.1 HAT2 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1199.1 AGL16 Arabidopsis thaliana MADS box factors MIKC
MA1201.1 AGL42 Arabidopsis thaliana MADS box factors MIKC
MA1202.1 AGL55 Arabidopsis thaliana MADS box factors M alpha
MA1203.1 AGL63 Arabidopsis thaliana MADS box factors MIKC
Showing 10 profiles of page 158 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.