JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1067.1 TCP5 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1068.1 TGA2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1068.2 TGA2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1069.1 TGA6 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1069.2 TGA6 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1070.1 TGA7 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1070.2 TGA7 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1071.1 DOF5.3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1074.1 UNE10 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1075.1 WRKY12 Arabidopsis thaliana GCM domain factors WRKY
Showing 10 profiles of page 143 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.