JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1041.1 MYB55 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1042.1 MYB59 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1043.1 NAC083 Arabidopsis thaliana GCM domain factors NAC
MA1044.1 NAC92 Arabidopsis thaliana GCM domain factors NAC
MA1045.1 NAC043 Arabidopsis thaliana GCM domain factors NAC
MA1046.1 NTL9 Arabidopsis thaliana GCM domain factors NAC
MA1047.1 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1047.2 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1048.1 ERF018 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1049.1 ERF094 Arabidopsis thaliana AP2/EREBP ERF/DREB
Showing 10 profiles of page 140 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.