JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0958.1 BHLH13 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0959.1 AIB Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0960.1 BHLH104 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0961.1 BHLH112 Oryza sativa Japonica Group Basic helix-loop-helix factors (bHLH)
MA0962.1 BHLH34 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0963.1 BHLH78 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0964.1 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0964.2 BIM1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0965.1 BIM2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0965.2 BIM2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0966.1 BIM3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0967.1 BZIP60 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group K
MA0968.1 BZIP68 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA0968.2 BZIP68 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA0969.1 CAMTA2 Arabidopsis thaliana CAMTA
MA0970.1 CAMTA3 Arabidopsis thaliana CAMTA
MA0971.1 DREB1A Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0972.1 CCA1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA0973.1 CDF2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.1 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0974.2 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0975.1 CRF2 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.1 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.2 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0977.1 DOF2.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0978.1 DREB1E Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0979.1 ERF008 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.1 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.2 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0981.1 DOF1.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0982.1 DOF2.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0983.1 DOF5.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.1 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0986.1 DREB2C Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0987.1 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0988.1 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA0989.1 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0990.1 HDG11 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0992.1 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0992.2 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0993.1 ERF7 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0994.1 ERF8 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0994.2 ERF8 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0995.1 ERF039 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0995.2 ERF039 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0997.1 ERF069 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0998.1 ERF096 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1000.1 ERF105 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1000.2 ERF105 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.1 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.2 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.3 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1004.1 ERF13 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.1 ERF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.2 ERF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1006.1 ERF6 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1007.1 PHYPADRAFT_173530 Physcomitrium patens AP2/EREBP ERF/DREB
MA1008.1 PHYPADRAFT_182268 Physcomitrium patens AP2/EREBP ERF/DREB
MA1009.1 ARF3 Arabidopsis thaliana B3 ARF
MA1010.1 PHYPADRAFT_64121 Physcomitrium patens AP2/EREBP ERF/DREB
MA1011.1 PHYPADRAFT_72483 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1012.1 AGL27 Arabidopsis thaliana MADS box factors MIKC
MA1013.1 GATA10 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1014.1 GATA11 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1015.1 GATA12 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1016.1 GATA15 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1017.1 GATA8 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1018.1 GATA9 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1019.1 Glyma19g26560.1 Glycine max Basic helix-loop-helix factors (bHLH) TCP
MA1020.1 GT-1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1021.1 PHYPADRAFT_48267 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1022.1 PHYPADRAFT_38837 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA1023.1 PHYPADRAFT_28324 Physcomitrium patens AP2/EREBP ERF/DREB
MA1024.1 HAT1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1025.1 HBI1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1026.1 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1026.2 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1027.1 KAN1 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1028.1 KAN4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1030.1 P0510F09.23 Oryza sativa Japonica Group Tryptophan cluster factors Myb
MA1031.1 OJ1581_H09.2 Oryza sativa Japonica Group Basic helix-loop-helix factors (bHLH) TCP
MA1032.1 DREB1G Oryza sativa Japonica Group AP2/EREBP ERF/DREB
MA1033.1 OJ1058_F05.8 Oryza sativa Japonica Group Basic leucine zipper factors (bZIP) Group A
MA1034.1 Os05g0497200 Oryza sativa Japonica Group AP2/EREBP ERF/DREB
MA1035.1 TCP4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1036.1 MYB111 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1037.1 MYB24 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1038.1 MYB3 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1039.1 MYB4 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1040.1 MYB46 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1041.1 MYB55 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1042.1 MYB59 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1043.1 NAC083 Arabidopsis thaliana GCM domain factors NAC
MA1044.1 NAC92 Arabidopsis thaliana GCM domain factors NAC
MA1045.1 NAC043 Arabidopsis thaliana GCM domain factors NAC
MA1046.1 NTL9 Arabidopsis thaliana GCM domain factors NAC
MA1047.1 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1047.2 TGA5 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1048.1 ERF018 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1049.1 ERF094 Arabidopsis thaliana AP2/EREBP ERF/DREB
Showing 100 profiles of page 14 from 25 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.