JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1021.1 PHYPADRAFT_48267 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1022.1 PHYPADRAFT_38837 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA1023.1 PHYPADRAFT_28324 Physcomitrium patens AP2/EREBP ERF/DREB
MA1024.1 HAT1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1025.1 HBI1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1026.1 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1026.2 ATHB-15 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1027.1 KAN1 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1028.1 KAN4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1030.1 P0510F09.23 Oryza sativa Japonica Group Tryptophan cluster factors Myb
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.