JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1011.1 PHYPADRAFT_72483 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA1012.1 AGL27 Arabidopsis thaliana MADS box factors MIKC
MA1013.1 GATA10 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1014.1 GATA11 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1015.1 GATA12 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1016.1 GATA15 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1017.1 GATA8 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1018.1 GATA9 Arabidopsis thaliana Other C4 zinc finger-type factors C4-GATA-related
MA1019.1 Glyma19g26560.1 Glycine max Basic helix-loop-helix factors (bHLH) TCP
MA1020.1 GT-1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
Showing 10 profiles of page 137 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.