JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0982.1 DOF2.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0983.1 DOF5.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.1 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0986.1 DREB2C Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0987.1 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0988.1 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH)
MA0989.1 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0990.1 HDG11 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0992.1 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0992.2 ERF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.