JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0974.2 CDF3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0975.1 CRF2 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.1 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.2 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0977.1 DOF2.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0978.1 DREB1E Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0979.1 ERF008 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.1 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.2 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0981.1 DOF1.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.