JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0921.1 ceh-48 Caenorhabditis elegans Homeo domain factors HD-CUT
MA0922.1 ces-2 Caenorhabditis elegans Basic leucine zipper factors (bZIP)
MA0923.1 lim-4 Caenorhabditis elegans C2H2 zinc finger factors HD-LIM
MA0924.1 pal-1 Caenorhabditis elegans Homeo domain factors HOX
MA0925.1 sma-4 Caenorhabditis elegans SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0926.1 unc-86 Caenorhabditis elegans Homeo domain factors POU domain factors
MA0927.1 vab-7 Caenorhabditis elegans Homeo domain factors HOX
MA0928.1 zfh-2 Caenorhabditis elegans Homeo domain factors
MA0929.1 NCU00019 Neurospora crassa Fork head/winged helix factors FOX
MA0930.1 ABF3 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
Showing 10 profiles of page 127 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.