JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0877.2 BARHL1 Homo sapiens Homeo domain factors NK
MA0877.3 BARHL1 Homo sapiens Homeo domain factors NK
MA0878.1 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.2 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.3 CDX1 Homo sapiens Homeo domain factors HOX
MA0879.1 Dlx1 Mus musculus Homeo domain factors NK
MA0879.2 DLX1 Homo sapiens Homeo domain factors NK
MA0880.1 Dlx3 Mus musculus Homeo domain factors NK
MA0881.1 Dlx4 Mus musculus Homeo domain factors NK
MA0882.1 DLX6 Homo sapiens Homeo domain factors NK
Showing 10 profiles of page 121 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.