JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0775.1 MEIS3 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0776.1 MYBL1 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA0777.1 MYBL2 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA0778.1 NFKB2 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0779.1 PAX1 Homo sapiens Paired box factors Paired domain only
MA0780.1 PAX3 Homo sapiens Paired box factors Paired plus homeo domain
MA0781.1 PAX9 Homo sapiens Paired box factors Paired domain only
MA0782.1 PKNOX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0782.2 PKNOX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0783.1 PKNOX2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.