RSAT - matrix-clustering result

Analysis: JASPAR_2022_urochordates_CORE (04/10/2021 19:32)

Command

matrix-clustering  -v 2 -matrix JASPAR_2022_urochordates_CORE data/motifs/urochordates/JASPAR_2022_CORE_urochordates.tf tf -hclust_method average -calc sum -title 'JASPAR 2022 urochordates CORE' -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -label_in_tree name -return json,heatmap -quick -o results/JASPAR_2022_matrix_clustering/urochordates/CORE/interactive_trees/JASPAR_2022_matrix_clustering_urochordates_CORE

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

Download
Root motifs

Complete results [zip]

Parameters used

Linkage method ?

Similarity metric ?

Thresholds to partition the tree?

Download

Download

average

Ncor

Ncor = 0.4
cor = 0.6

Logo Forest (dynamic browsing)

Logo Forest (rapid overview - low image quality)

Clusters Summary

Clusters Summary Table

Cluster ID	# Motifs	Motif_Name::Collection	Number of Motifs by Collection	Root Motif (transfac Format)
cluster_1	29	Otx::JASPAR_2022_urochordates_CORE:: Gsx::JASPAR_2022_urochordates_CORE:: Nk-1::JASPAR_2022_urochordates_CORE:: Bsx::JASPAR_2022_urochordates_CORE:: Msx::JASPAR_2022_urochordates_CORE:: Emx::JASPAR_2022_urochordates_CORE:: Hox5::JASPAR_2022_urochordates_CORE:: Otp::JASPAR_2022_urochordates_CORE:: Isx::JASPAR_2022_urochordates_CORE:: Prop::JASPAR_2022_urochordates_CORE:: Hmbox1::JASPAR_2022_urochordates_CORE:: Lmx-b::JASPAR_2022_urochordates_CORE:: Uncx-b::JASPAR_2022_urochordates_CORE:: Tlx::JASPAR_2022_urochordates_CORE:: Nkx3::JASPAR_2022_urochordates_CORE:: Rax::JASPAR_2022_urochordates_CORE:: Hox1::JASPAR_2022_urochordates_CORE:: Lhx3/4::JASPAR_2022_urochordates_CORE:: Atbf::JASPAR_2022_urochordates_CORE:: Hnf1::JASPAR_2022_urochordates_CORE:: Mnx::JASPAR_2022_urochordates_CORE:: Hex::JASPAR_2022_urochordates_CORE:: Nk-3::JASPAR_2022_urochordates_CORE:: Hox3::JASPAR_2022_urochordates_CORE:: Noto::JASPAR_2022_urochordates_CORE:: Hox4::JASPAR_2022_urochordates_CORE:: Meox::JASPAR_2022_urochordates_CORE:: Dlx-c::JASPAR_2022_urochordates_CORE:: Dlx-b::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::29_motifs	Show matrix
cluster_2	15	FoxA-b::JASPAR_2022_urochordates_CORE:: FoxB::JASPAR_2022_urochordates_CORE:: FoxI-c::JASPAR_2022_urochordates_CORE:: FoxO::JASPAR_2022_urochordates_CORE:: FoxE::JASPAR_2022_urochordates_CORE:: FoxI-a::JASPAR_2022_urochordates_CORE:: FoxM::JASPAR_2022_urochordates_CORE:: FoxG::JASPAR_2022_urochordates_CORE:: FoxF::JASPAR_2022_urochordates_CORE:: FoxI-b::JASPAR_2022_urochordates_CORE:: FoxK::JASPAR_2022_urochordates_CORE:: FoxD-b::JASPAR_2022_urochordates_CORE:: FoxL2::JASPAR_2022_urochordates_CORE:: FoxA-a::JASPAR_2022_urochordates_CORE:: FoxQ::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::15_motifs	Show matrix
cluster_3	5	Erf-a::JASPAR_2022_urochordates_CORE:: Fli-Erg-b::JASPAR_2022_urochordates_CORE:: Fli-Erg-a::JASPAR_2022_urochordates_CORE:: Etv1/4/5::JASPAR_2022_urochordates_CORE:: Fli-Erg-c::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::5_motifs	Show matrix
cluster_4	4	SoxB1::JASPAR_2022_urochordates_CORE:: SoxC::JASPAR_2022_urochordates_CORE:: SoxB2::JASPAR_2022_urochordates_CORE:: SoxF::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::4_motifs	Show matrix
cluster_5	2	large-Maf::JASPAR_2022_urochordates_CORE:: small-Maf::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::2_motifs	Show matrix
cluster_6	6	Hes-c::JASPAR_2022_urochordates_CORE:: Hes-b::JASPAR_2022_urochordates_CORE:: Hey::JASPAR_2022_urochordates_CORE:: Max::JASPAR_2022_urochordates_CORE:: Mitf::JASPAR_2022_urochordates_CORE:: Usf::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::6_motifs	Show matrix
cluster_7	4	Klf15::JASPAR_2022_urochordates_CORE:: Klf3/8/12::JASPAR_2022_urochordates_CORE:: Klf5-like::JASPAR_2022_urochordates_CORE:: Klf6-7-like::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::4_motifs	Show matrix
cluster_8	3	Six3/6::JASPAR_2022_urochordates_CORE:: GATA-a::JASPAR_2022_urochordates_CORE:: GATA1/2/3::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::3_motifs	Show matrix
cluster_9	4	Snail::JASPAR_2022_urochordates_CORE:: Tcf3-4-12::JASPAR_2022_urochordates_CORE:: AP4::JASPAR_2022_urochordates_CORE:: Atoh7::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::4_motifs	Show matrix
cluster_10	5	Tbx15/18/22::JASPAR_2022_urochordates_CORE:: Tbx2/3::JASPAR_2022_urochordates_CORE:: Tbox-a::JASPAR_2022_urochordates_CORE:: Brachyury::JASPAR_2022_urochordates_CORE:: Tbox-b::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::5_motifs	Show matrix
cluster_11	2	Fos-b::JASPAR_2022_urochordates_CORE:: Creb1::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::2_motifs	Show matrix
cluster_12	2	NFkb::JASPAR_2022_urochordates_CORE:: Rel::JASPAR_2022_urochordates_CORE::	JASPAR_2022_urochordates_CORE::2_motifs	Show matrix
cluster_13	1	Cebpg::JASPAR_2022_urochordates_CORE	JASPAR_2022_urochordates_CORE : 1 motif	Show matrix
cluster_14	1	Hsf1-2-4::JASPAR_2022_urochordates_CORE	JASPAR_2022_urochordates_CORE : 1 motif	Show matrix
cluster_15	1	Irf-b::JASPAR_2022_urochordates_CORE	JASPAR_2022_urochordates_CORE : 1 motif	Show matrix
cluster_16	1	YY1-2::JASPAR_2022_urochordates_CORE	JASPAR_2022_urochordates_CORE : 1 motif	Show matrix
cluster_17	1	Macho-1::JASPAR_2022_urochordates_CORE	JASPAR_2022_urochordates_CORE : 1 motif	Show matrix

Note: by default the table displays the first 50 clusters. Click on the Show X entries button to display more (or less) clusters.
Click on the column names to change the order of the data.
Use the Search window to find your motif (s) of interest.

Individual Cluster View

Individual Cluster View

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cluster_1

cluster_2

cluster_3

cluster_4

cluster_5

cluster_6

cluster_7

cluster_8

cluster_9

cluster_10

cluster_11

cluster_12

cluster_13

cluster_14

cluster_15

cluster_16

cluster_17

Display Logo Trees

cluster_1

cluster_2

cluster_3

cluster_4

cluster_5

cluster_6

cluster_7

cluster_8

cluster_9

cluster_10

cluster_11

cluster_12

cluster_13

cluster_14

cluster_15

cluster_16

cluster_17

Display Branch-Motifs

Each cluster has a different color.
Click on the upper buttons to display separately the information of each cluster.
Click on the circles at each tree to display its corresponding merged motifs.

Definitions

Logo tree.
This results shows the hierarchical tree with its logo alignment of one cluster.
The logos are shown in Forward (left logo) and Reverse (right logo) orientation.
Branch-motifs.
On the trees are displayed the branch number that is the number in which the motifs were incorporated in the tree.
The Branch-Motifs table shows the logo in both orientations and the link to the file in TRANSFAC format with the branch-motif.

Individual Motif View

Individual Motif View

Motif id	Motif name	Cluster	Collection	Width	IC	Number of sites	Consensus	Consensus (Rev)
JASPAR_2022_urochordates_CORE_m65_MA1906_1	Noto	cluster_1	JASPAR_2022_urochordates_CORE	23	5.40	1001	++WWWWWVMTCATTARYWWWWW+	+wwwwwryTAATgAkbwwwww++
JASPAR_2022_urochordates_CORE_m31_MA1872_1	FoxO	cluster_2	JASPAR_2022_urochordates_CORE	23	6.79	1001	++WAAAMRWAAACATGTTTWYW+	+wrwaaacATGTTTwyktttw++
JASPAR_2022_urochordates_CORE_m47_MA1888_1	Irf-b	cluster_15	JASPAR_2022_urochordates_CORE	22	11.09	1001	GAdActrgAGTwTCGyttykyk	MRMRAARCGAWACTCYAGTHTC
JASPAR_2022_urochordates_CORE_m59_MA1900_1	Mnx	cluster_1	JASPAR_2022_urochordates_CORE	23	6.04	1001	+WWWWWTYAATTAAWWWWWWW++	++wwwwwwwtTAATTrawwwww+
JASPAR_2022_urochordates_CORE_m39_MA1880_1	Hey	cluster_6	JASPAR_2022_urochordates_CORE	23	6.78	1001	+sssssgrCACGTGccvcsbsss	SSSVSGBGGCACGTGYCSSSSS+
JASPAR_2022_urochordates_CORE_m78_MA1919_1	Tbox-a	cluster_10	JASPAR_2022_urochordates_CORE	23	6.51	1001	+SCMMMMWTTCACACCYYCMCCC	gggkgrrGGTGTGAawkkkkgs+
JASPAR_2022_urochordates_CORE_m28_MA1869_1	FoxK	cluster_2	JASPAR_2022_urochordates_CORE	23	6.17	1001	+WWAWAWRTAAACAMAMMMMM++	++kkkkktkTGTTTaywtwtww+
JASPAR_2022_urochordates_CORE_m58_MA1899_1	Mitf	cluster_6	JASPAR_2022_urochordates_CORE	23	6.71	1001	SGGSRSRTCACGTGAYKBSS+++	+++ssvmrtCACGTGAysysccs
JASPAR_2022_urochordates_CORE_m70_MA1911_1	Rel	cluster_12	JASPAR_2022_urochordates_CORE	22	7.17	1001	+kkkkkkgGGAATTyccsydk+	+MHRSGGRAATTCCCMMMMMM+
JASPAR_2022_urochordates_CORE_m67_MA1908_1	Otx	cluster_1	JASPAR_2022_urochordates_CORE	23	5.68	1001	+DWWWWWKCGGATTAAKBYKWWW	wwwmrvmtTAATCCgmwwwwwh+
JASPAR_2022_urochordates_CORE_m10_MA1851_1	Dlx-c	cluster_1	JASPAR_2022_urochordates_CORE	23	6.50	1001	wwwwwrrgaTAATTAyytwwww+	+WWWWARRTAATTATCYYWWWWW
JASPAR_2022_urochordates_CORE_m84_MA1925_1	Uncx-b	cluster_1	JASPAR_2022_urochordates_CORE	23	5.54	1001	+WWWAWWWAATTAAWTWWWWW++	++wwwwwawTTAATTwwwtwww+
JASPAR_2022_urochordates_CORE_m18_MA1859_1	FoxA-a	cluster_2	JASPAR_2022_urochordates_CORE	23	10.73	1001	kcmyTAwGTAAACAAwvvmw+++	+++WKBBWTTGTTTACWTARKGM
JASPAR_2022_urochordates_CORE_m27_MA1868_1	FoxI-c	cluster_2	JASPAR_2022_urochordates_CORE	23	5.50	1001	++YMMVWMAAAACATMSTMSDY+	+rhskaskATGTTTtkwbkkr++
JASPAR_2022_urochordates_CORE_m34_MA1875_1	GATA1/2/3	cluster_8	JASPAR_2022_urochordates_CORE	20	5.56	1001	wwwdwwraGATAAgmwwwww	WWWWWKCTTATCTYWWHWWW
JASPAR_2022_urochordates_CORE_m22_MA1863_1	FoxE	cluster_2	JASPAR_2022_urochordates_CORE	23	6.01	1001	++MYWAWAWAAACAAMMMMWHH+	+ddwkkkkTTGTTTwtwtwrk++
JASPAR_2022_urochordates_CORE_m77_MA1918_1	SoxF	cluster_4	JASPAR_2022_urochordates_CORE	21	6.48	1001	+awwwwyhATTGTthtttwww	WWWAAADAACAATDRWWWWT+
JASPAR_2022_urochordates_CORE_m48_MA1889_1	Isx	cluster_1	JASPAR_2022_urochordates_CORE	23	5.96	1001	+wwwtwawTTAATTarattww++	++WWAATYTAATTAAWTWAWWW+
JASPAR_2022_urochordates_CORE_m20_MA1861_1	FoxB	cluster_2	JASPAR_2022_urochordates_CORE	23	9.05	1001	+hmwwawgYAAATATTkrywtwd	HWAWRYMAATATTTRCWTWWKD+
JASPAR_2022_urochordates_CORE_m15_MA1856_1	Fli-Erg-b	cluster_3	JASPAR_2022_urochordates_CORE	23	7.26	1001	MMCCVAAACCGGAARYRVRRHY+	+rdyybyryTTCCGGtttbggkk
JASPAR_2022_urochordates_CORE_m30_MA1871_1	FoxM	cluster_2	JASPAR_2022_urochordates_CORE	23	7.58	1001	++maaaaamAAACAAaaamaam+	+KTTKTTTTTGTTTKTTTTTK++
JASPAR_2022_urochordates_CORE_m63_MA1904_1	Nk-3	cluster_1	JASPAR_2022_urochordates_CORE	23	5.78	1001	+wwwttaaTTAATTrrtwwww++	++WWWWAYYAATTAATTAAWWW+
JASPAR_2022_urochordates_CORE_m76_MA1917_1	SoxC	cluster_4	JASPAR_2022_urochordates_CORE	21	5.09	1001	+WWWAAAAAACAATDAWWWWK	mwwwwthATTGTTttttwww+
JASPAR_2022_urochordates_CORE_m32_MA1873_1	FoxQ	cluster_2	JASPAR_2022_urochordates_CORE	23	5.52	1001	WWWWWWWATAAACWWWWWWW+++	+++wwwwwwwGTTTATwwwwwww
JASPAR_2022_urochordates_CORE_m69_MA1910_1	Rax	cluster_1	JASPAR_2022_urochordates_CORE	23	5.18	1001	+WWWAWYYAATTAATTWAWWW++	++wwwtwaaTTAATTrrwtwww+
JASPAR_2022_urochordates_CORE_m75_MA1916_1	SoxB2	cluster_4	JASPAR_2022_urochordates_CORE	21	6.45	1001	+wwwwkyyATTGTTttytttw	WAAARAAAACAATRRMWWWW+
JASPAR_2022_urochordates_CORE_m60_MA1901_1	Msx	cluster_1	JASPAR_2022_urochordates_CORE	23	5.89	1001	++WWWWAMSYAATTAMYYAWWW+	+wwwtrrkTAATTrsktwwww++
JASPAR_2022_urochordates_CORE_m81_MA1922_1	Tbx2/3	cluster_10	JASPAR_2022_urochordates_CORE	23	7.68	1001	++KKKKAWWTCACACCTYYTTY+	+raarrAgGTGTgAwwtmmmm++
JASPAR_2022_urochordates_CORE_m83_MA1924_1	Tlx	cluster_1	JASPAR_2022_urochordates_CORE	23	5.18	1001	+WWWWWWWTTAATTRWWWWWW++	++wwwwwwyAATTAAwwwwwww+
JASPAR_2022_urochordates_CORE_m16_MA1857_1	Fli-Erg-c	cluster_3	JASPAR_2022_urochordates_CORE	23	5.51	1001	+ammamwwCCGGAAryraaaw++	++WTTTYRYTTCCGGWWKTKKT+
JASPAR_2022_urochordates_CORE_m74_MA1915_1	SoxB1	cluster_4	JASPAR_2022_urochordates_CORE	21	7.27	1001	WMMAAWAACAATGWHAWTKK+	+mmAwtdwcATTGTtwttkkw
JASPAR_2022_urochordates_CORE_m54_MA1895_1	Lhx3/4	cluster_1	JASPAR_2022_urochordates_CORE	23	5.15	1001	+wwwwwwaTTAATTaawwwww++	++WWWWWTTAATTAATWWWWWW+
JASPAR_2022_urochordates_CORE_m79_MA1920_1	Tbox-b	cluster_10	JASPAR_2022_urochordates_CORE	23	7.09	1001	cyytwrrAGGTGygAawwwymm+	+KKRWWWTTCRCACCTYYWARRG
JASPAR_2022_urochordates_CORE_m49_MA1890_1	Klf15	cluster_7	JASPAR_2022_urochordates_CORE	22	10.26	1001	GKKKGGGGGGGYGTGKSGGGGG	cccccsmCACrCCCCcccmmmc
JASPAR_2022_urochordates_CORE_m50_MA1891_1	Klf3/8/12	cluster_7	JASPAR_2022_urochordates_CORE	22	9.75	1001	+KGGKKKTGGGYGTGGYMKKK+	+mmmkrCCACrCCCammmccm+
JASPAR_2022_urochordates_CORE_m80_MA1921_1	Tbx15/18/22	cluster_10	JASPAR_2022_urochordates_CORE	23	8.33	1001	GGTGWBATCACACCTYYCMYMM+	+kkrkgrrAGGTGTgAtvwCaCc
JASPAR_2022_urochordates_CORE_m42_MA1883_1	Hox1	cluster_1	JASPAR_2022_urochordates_CORE	23	5.08	1001	+wwwwwwwTTAATTawwwwww++	++WWWWWWTAATTAAWWWWWWW+
JASPAR_2022_urochordates_CORE_m61_MA1902_1	NFkb	cluster_12	JASPAR_2022_urochordates_CORE	22	7.63	1001	vmaaarGGGGAATcCCCctwyy	RRWAGGGGGATTCCCCYTTTKB
JASPAR_2022_urochordates_CORE_m1_MA0118_1	Macho-1	cluster_17	JASPAR_2022_urochordates_CORE	9	5.18	42	ygGGkGkym	KRMCMCCCR
JASPAR_2022_urochordates_CORE_m62_MA1903_1	Nk-1	cluster_1	JASPAR_2022_urochordates_CORE	23	5.09	1001	++DKKKKKTTAATTGRWWWWWD+	+hwwwwwyCAATTAammmmmh++
JASPAR_2022_urochordates_CORE_m85_MA1926_1	Usf	cluster_6	JASPAR_2022_urochordates_CORE	23	8.02	1001	TWTYWDRTCACGTGAYYWDT+++	+++ahwrrtCACGTGayhwrawa
JASPAR_2022_urochordates_CORE_m11_MA1852_1	Emx	cluster_1	JASPAR_2022_urochordates_CORE	23	5.24	1001	++wwttdryTAATTGrkkwwww+	+WWWWMMYCAATTARYHAAWW++
JASPAR_2022_urochordates_CORE_m13_MA1854_1	Etv1/4/5	cluster_3	JASPAR_2022_urochordates_CORE	23	5.44	1001	+GKGRSKWCCGGAARYRVSSY++	++rssbyryTTCCGGwmsycmc+
JASPAR_2022_urochordates_CORE_m66_MA1907_1	Otp	cluster_1	JASPAR_2022_urochordates_CORE	23	7.75	1001	+WWWAWTTAATTAAWTWWWWW++	++wwwwwawTTAATTaawtwww+
JASPAR_2022_urochordates_CORE_m2_MA1843_1	AP4	cluster_9	JASPAR_2022_urochordates_CORE	21	8.71	1001	+gwwrawCAGCTGathawcar	YTGWTDATCAGCTGWTYWWC+
JASPAR_2022_urochordates_CORE_m4_MA1845_1	Atoh7	cluster_9	JASPAR_2022_urochordates_CORE	21	6.70	1001	+gvryraCAGCTGTyrybscs	SGSVRYRACAGCTGTYRYBC+
JASPAR_2022_urochordates_CORE_m24_MA1865_1	FoxG	cluster_2	JASPAR_2022_urochordates_CORE	23	5.44	1001	+MMMMMMACAAACAMMMMMMM++	++kkkkkkkTGTTTGtkkkkkk+
JASPAR_2022_urochordates_CORE_m45_MA1886_1	Hox5	cluster_1	JASPAR_2022_urochordates_CORE	23	5.24	1001	++wwwwwrtTAATTGsttwtww+	+WWAWAASCAATTAAYWWWWW++
JASPAR_2022_urochordates_CORE_m26_MA1867_1	FoxI-b	cluster_2	JASPAR_2022_urochordates_CORE	23	8.34	1001	+TDTWWWRTAAACAWWAAMAW++	++wtkttwwTGTTTAywwwaha+
JASPAR_2022_urochordates_CORE_m44_MA1885_1	Hox4	cluster_1	JASPAR_2022_urochordates_CORE	23	5.95	1001	++wwwwwraTmATTAwykwwww+	+WWWWMRWTAATKATYWWWWW++
JASPAR_2022_urochordates_CORE_m55_MA1896_1	Lmx-b	cluster_1	JASPAR_2022_urochordates_CORE	23	5.89	1001	+wwwwwaatTAATTaawtwww++	++WWWAWTTAATTAATTWWWWW+
JASPAR_2022_urochordates_CORE_m46_MA1887_1	Hsf1-2-4	cluster_14	JASPAR_2022_urochordates_CORE	20	9.20	1001	tmGAaydTTCTAGAAhdttc	GAAHDTTCTAGAAHRTTCKA
JASPAR_2022_urochordates_CORE_m8_MA1849_1	Creb1	cluster_11	JASPAR_2022_urochordates_CORE	22	10.97	1001	aaakytrTGACGTCAyarmttt	AAAKYTRTGACGTCAYARMTTT
JASPAR_2022_urochordates_CORE_m9_MA1850_1	Dlx-b	cluster_1	JASPAR_2022_urochordates_CORE	23	6.70	1001	WWWWWRSGGTAATTAYCSYHWW+	+wwdrsgrTAATTAccsywwwww
JASPAR_2022_urochordates_CORE_m53_MA1894_1	large-Maf	cluster_5	JASPAR_2022_urochordates_CORE	20	6.62	1001	wwwwwwwTGCTGAckhagca	TGCTDMGTCAGCAWWWWWWW
JASPAR_2022_urochordates_CORE_m23_MA1864_1	FoxF	cluster_2	JASPAR_2022_urochordates_CORE	23	7.07	1001	+wwwwawaTAAAyAwwyamah++	++DTKTRWWTRTTTATWTWWWW+
JASPAR_2022_urochordates_CORE_m57_MA1898_1	Meox	cluster_1	JASPAR_2022_urochordates_CORE	23	5.86	1001	++WWWWWRRTMATTAATWWWWW+	+wwwwwatTAATkAyywwwww++
JASPAR_2022_urochordates_CORE_m52_MA1893_1	Klf6-7-like	cluster_7	JASPAR_2022_urochordates_CORE	22	9.06	1001	+ccccvcCACrCCCmmccccc+	+GGGGGKKGGGYGTGGBGGGG+
JASPAR_2022_urochordates_CORE_m37_MA1878_1	Hes-c	cluster_6	JASPAR_2022_urochordates_CORE	23	5.98	1001	+YGYVHSRCACGCGCCWSRCRCG	cgygyswggCGCGTGysdbrcr+
JASPAR_2022_urochordates_CORE_m7_MA1848_1	Cebpg	cluster_13	JASPAR_2022_urochordates_CORE	20	5.28	1001	rrvmrrtATTGCAhyahwky	RMWDTRDTGCAATAYYKBYY
JASPAR_2022_urochordates_CORE_m56_MA1897_1	Max	cluster_6	JASPAR_2022_urochordates_CORE	23	6.61	1001	+KGKTDRMCACGTGKYHAMCM++	++kgktdrmCACGTGkyhamcm+
JASPAR_2022_urochordates_CORE_m29_MA1870_1	FoxL2	cluster_2	JASPAR_2022_urochordates_CORE	23	7.12	1001	+awwwawaTAAACAaamamam++	++KTKTKTTTGTTTATWTWWWT+
JASPAR_2022_urochordates_CORE_m17_MA1858_1	Fos-b	cluster_11	JASPAR_2022_urochordates_CORE	22	11.10	1001	++MAGDATGACGTCATHSTKWM	kwmasdATGACGTCAThctk++
JASPAR_2022_urochordates_CORE_m71_MA1912_1	Six3/6	cluster_8	JASPAR_2022_urochordates_CORE	20	5.93	1001	DWDWRSSGTATCAWWTWCAW	wtgwawwTGATACssywhwh
JASPAR_2022_urochordates_CORE_m12_MA1853_1	Erf-a	cluster_3	JASPAR_2022_urochordates_CORE	23	6.19	1001	+++TTTTKKYACTTCCGKTYYYY	rrrramcGGAAGTrmmaaaa+++
JASPAR_2022_urochordates_CORE_m38_MA1879_1	Hex	cluster_1	JASPAR_2022_urochordates_CORE	23	6.07	1001	+wwwwywaTTAATTrmtwwww++	++WWWWAKYAATTAATWRWWWW+
JASPAR_2022_urochordates_CORE_m35_MA1876_1	Gsx	cluster_1	JASPAR_2022_urochordates_CORE	23	8.00	1001	AWWDSYAATTAAAWWSYMAT+++	+++AtkrswwtTTAATtrshwwT
JASPAR_2022_urochordates_CORE_m82_MA1923_1	Tcf3-4-12	cluster_9	JASPAR_2022_urochordates_CORE	21	6.66	1001	YRGGTGRCAGGTGKSASSYG+	+crsstsmCACCTGycaccyr
JASPAR_2022_urochordates_CORE_m86_MA1927_1	YY1-2	cluster_16	JASPAR_2022_urochordates_CORE	22	10.41	1001	srgcsgCCATwATGGcggcyby	RVRGCCGCCATWATGGCSGCYS
JASPAR_2022_urochordates_CORE_m19_MA1860_1	FoxA-b	cluster_2	JASPAR_2022_urochordates_CORE	23	6.47	1001	+WWWWRWRYAAATATTTRHWHWW	wwdwdyaAATATTTrywywwww+
JASPAR_2022_urochordates_CORE_m43_MA1884_1	Hox3	cluster_1	JASPAR_2022_urochordates_CORE	23	5.87	1001	++WWWWWWATCATTAWYWWWWW+	+wwwwwrwTAATgAtwwwwww++
JASPAR_2022_urochordates_CORE_m51_MA1892_1	Klf5-like	cluster_7	JASPAR_2022_urochordates_CORE	22	6.69	1001	+cccssccACGCCChmmcccc+	+GGGGKKDGGGCGTGGSSGGG+
JASPAR_2022_urochordates_CORE_m33_MA1874_1	GATA-a	cluster_8	JASPAR_2022_urochordates_CORE	20	5.87	1001	wwwwwrctGATAAsrwawhh	DDWTWYSTTATCAGYWWWWW
JASPAR_2022_urochordates_CORE_m72_MA1913_1	small-Maf	cluster_5	JASPAR_2022_urochordates_CORE	20	6.62	1001	kdrwwwwTGCTGAykyarsm	KSYTRMRTCAGCAWWWWYHM
JASPAR_2022_urochordates_CORE_m14_MA1855_1	Fli-Erg-a	cluster_3	JASPAR_2022_urochordates_CORE	23	6.42	1001	+ybcmcywCCGGAAryvmvmm++	++KKBKBRYTTCCGGWRGKGVR+
JASPAR_2022_urochordates_CORE_m40_MA1881_1	Hmbox1	cluster_1	JASPAR_2022_urochordates_CORE	23	5.67	1001	+ddwwwawTTAATTaawtttt++	++AAAAWTTAATTAAWTWWWHH+
JASPAR_2022_urochordates_CORE_m5_MA1846_1	Brachyury	cluster_10	JASPAR_2022_urochordates_CORE	23	6.51	1001	mrcrcrtAgGTGTGAawtttsg+	+CSAAAWTTCACACCTAYGYGYK
JASPAR_2022_urochordates_CORE_m25_MA1866_1	FoxI-a	cluster_2	JASPAR_2022_urochordates_CORE	23	7.24	1001	++aaaamahAAACAAammmmmm+	+KKKKKKTTTGTTTDTKTTTT++
JASPAR_2022_urochordates_CORE_m3_MA1844_1	Atbf	cluster_1	JASPAR_2022_urochordates_CORE	23	5.97	1001	+wwwwwaatTAATTamwwwww++	++WWWWWKTAATTAATTWWWWW+
JASPAR_2022_urochordates_CORE_m36_MA1877_1	Hes-b	cluster_6	JASPAR_2022_urochordates_CORE	23	5.80	1000	+CGMCWGRCACGTGCCACCCSCS	sgsgggtGgCACGTGycwgkcg+
JASPAR_2022_urochordates_CORE_m64_MA1905_1	Nkx3	cluster_1	JASPAR_2022_urochordates_CORE	23	5.05	1001	+WWWHMBYAATTAATKAWWWW++	++wwwwtmaTTAATTrvkdwww+
JASPAR_2022_urochordates_CORE_m68_MA1909_1	Prop	cluster_1	JASPAR_2022_urochordates_CORE	23	5.37	1001	+ddttwawTTAATTwrattwm++	++KWAATYWAATTAAWTWAAHH+
JASPAR_2022_urochordates_CORE_m21_MA1862_1	FoxD-b	cluster_2	JASPAR_2022_urochordates_CORE	23	7.05	1001	+AMHWAWATAAACAWWMAHWW++	++wwdtkwwTGTTTatwtwdkt+
JASPAR_2022_urochordates_CORE_m73_MA1914_1	Snail	cluster_9	JASPAR_2022_urochordates_CORE	21	7.21	1001	KKKGKDRCAGGTGYRBKKKK+	+mmmmvyrCACCTGyhmcmmm
JASPAR_2022_urochordates_CORE_m41_MA1882_1	Hnf1	cluster_1	JASPAR_2022_urochordates_CORE	23	6.66	1001	+wwwwwaatTAATTrvwwwww++	++WWWWWBYAATTAATTWWWWW+
JASPAR_2022_urochordates_CORE_m6_MA1847_1	Bsx	cluster_1	JASPAR_2022_urochordates_CORE	23	5.57	1001	++WWWWVRSCAATTAWSKCMTW+	+wakgmswTAATTGsybwwww++

Click on the column names to change the order of the data.
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Heatmap View

Additional Files

Exported files

File	Description
Pairwise comparison	This table shows the pairwise comparison between all the input motifs using different metrics. This is the compare-matrices result.
Matrix description	This table shows information of each input motif.
Cluster-wise Motif Files [zip]	One TRANSFAC file is generated for each cluster including all the input motifs grouped in the corresponding cluster.
Root motifs	A file with the root matrix of each cluster.
Motif collections per cluster	A tab separated file containing the counts of motif of each collection on each cluster.
Clusters	A tab separated file containing the clusters and their correspondng motifs.
Central motifs IDs	A tab separated file containing the central motif, that one who is the most similar to all the others motif in the same cluster.
Central motifs (in TRANSFAC format)	A transfac file containing the central motif, that one who is the most similar to all the others motif within the same cluster.
Input motifs	The input motifs analyzed with matrix-clustering.

References
1. Castro-Mondragon JA et al. RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections. doi: 10.1093/nar/gkx314; Nucleic Acids Research (2017)
2. Last RSAT release: Nguyen NTT et al. RSAT 2018: regulatory sequence analysis tools 20th anniversary. Nucleic Acids Research (2018).
Additional Information
- Jacques van Helden course
Contact
- Jaime Castro-Mondragon - j.a.c.mondragon@ncmm.uio.no
- Morgane Thomas-Chollier - mthomas@biologie.ens.fr
- Jacques van Helden - Jacques.van-Helden@univ-amu.fr

RSAT - matrix-clustering result

Analysis: JASPAR_2022_urochordates_CORE (04/10/2021 19:32)

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Results Summary

Clusters Summary Table

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Branch Motifs

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Definitions

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Exported files