matrix-clustering JASPAR_2022_fungi

matrix-clustering  -v 2 -matrix JASPAR_2022_fungi_CORE data/motifs/fungi/JASPAR_2022_CORE_fungi.tf tf -hclust_method average -calc sum -title 'JASPAR 2022 fungi CORE' -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -label_in_tree name -return json,heatmap -quick -o results/JASPAR_2022_matrix_clustering/fungi/CORE/interactive_trees/JASPAR_2022_matrix_clustering_fungi_CORE

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

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Root motifs

Complete results [zip]

Parameters used

Linkage method

Similarity metric

Thresholds to partition the tree

179

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average

Ncor

Ncor = 0.4
cor = 0.6

Individual Motif View

Motif id	Motif name	Cluster	Collection	Width	IC	Number of sites	Consensus	Consensus (Rev)
JASPAR_2022_fungi_CORE_m67_MA0341_1	MSN2	cluster_1	JASPAR_2022_fungi_CORE	10	6.08	100	++CCCCY+++	+++rGGGG++
JASPAR_2022_fungi_CORE_m154_MA0439_1	YRR1	cluster_6	JASPAR_2022_fungi_CORE	13	6.90	101	++RCGGADATAAG	cttAThtCCGy++
JASPAR_2022_fungi_CORE_m70_MA0344_1	NHP10	cluster_15	JASPAR_2022_fungi_CORE	10	8.22	102	gCCGGGGa++	++TCCCCGGC
JASPAR_2022_fungi_CORE_m5_MA0270_1	AFT2	cluster_43	JASPAR_2022_fungi_CORE	8	7.98	100	sRCACCCs	SGGGTGYS
JASPAR_2022_fungi_CORE_m158_MA0929_1	NCU00019	cluster_17	JASPAR_2022_fungi_CORE	16	6.57	1001	++++TTTRTTTACWAT	atwGTAAAyAaa++++
JASPAR_2022_fungi_CORE_m120_MA0402_1	SWI5	cluster_11	JASPAR_2022_fungi_CORE	8	7.87	101	DMCCAGCA	tGCTGGkh
JASPAR_2022_fungi_CORE_m42_MA0313_1	HAP2	cluster_24	JASPAR_2022_fungi_CORE	7	5.70	4272	+TTGGy+	+RCCAA+
JASPAR_2022_fungi_CORE_m114_MA0396_1	STP3	cluster_3	JASPAR_2022_fungi_CORE	11	7.74	101	+rcTAGCGca+	+TGCGCTAGY+
JASPAR_2022_fungi_CORE_m40_MA0310_1	HAC1	cluster_7	JASPAR_2022_fungi_CORE	9	8.04	101	YACGTGKC+	+gMCACGTr
JASPAR_2022_fungi_CORE_m72_MA0349_1	OPI1	cluster_29	JASPAR_2022_fungi_CORE	8	7.16	279	+cGAACCv	BGGTTCG+
JASPAR_2022_fungi_CORE_m97_MA0377_1	SFL1	cluster_23	JASPAR_2022_fungi_CORE	21	7.59	999	wmrmraAtmGAAGaaawawww	WWWTWTTTCTTCKATTYKYKW
JASPAR_2022_fungi_CORE_m102_MA0384_1	SNT2	cluster_3	JASPAR_2022_fungi_CORE	11	12.29	3430	YGGCGCTAYCA	TGrTAGCGCCr
JASPAR_2022_fungi_CORE_m8_MA0273_1	ARO80	cluster_55	JASPAR_2022_fungi_CORE	21	7.69	999	grkmawkCTCGGbwAkwawkh	DMWTWMTWVCCGAGMWTKMYC
JASPAR_2022_fungi_CORE_m91_MA0371_1	ROX1	cluster_49	JASPAR_2022_fungi_CORE	12	11.05	8	yYhATTGTTyTs	SARAACAATDRR
JASPAR_2022_fungi_CORE_m74_MA0351_1	DOT6	cluster_5	JASPAR_2022_fungi_CORE	21	9.25	999	wbykkcwsCTCATCGcvycyt	ARGRBGCGATGAGSWGMMRVW
JASPAR_2022_fungi_CORE_m176_MA0363_2	REB1	cluster_40	JASPAR_2022_fungi_CORE	17	9.09	691	wtyrTTACCCGgmyw++	++WRKCCGGGTAAYRAW
JASPAR_2022_fungi_CORE_m169_MA0284_2	CIN5	cluster_16	JASPAR_2022_fungi_CORE	21	9.73	345	++++WGATTAYGTAATYW+++	+++wrATTACrTAATcw++++
JASPAR_2022_fungi_CORE_m15_MA0282_1	CEP3	cluster_6	JASPAR_2022_fungi_CORE	13	8.06	101	+yTCGGAAa++++	++++TTTCCGAR+
JASPAR_2022_fungi_CORE_m166_MA0265_2	ABF1	cluster_63	JASPAR_2022_fungi_CORE	20	10.49	427	wtttCGTatawARTGAyatw	WATRTCAYTWTATACGAAAW
JASPAR_2022_fungi_CORE_m92_MA0372_1	RPH1	cluster_1	JASPAR_2022_fungi_CORE	10	8.15	101	+aCCCCTwA+	+TWAGGGGT+
JASPAR_2022_fungi_CORE_m121_MA0404_1	TBS1	cluster_29	JASPAR_2022_fungi_CORE	8	6.82	101	CGGAtCCG	CGGATCCG
JASPAR_2022_fungi_CORE_m71_MA0348_1	OAF1	cluster_6	JASPAR_2022_fungi_CORE	13	7.17	101	++TATCYCCGR++	++yCGGrGaTa++
JASPAR_2022_fungi_CORE_m28_MA0296_1	FKH1	cluster_44	JASPAR_2022_fungi_CORE	20	11.23	999	ygwwwtGTAAACAAagrrga	TCYYCTTTGTTTACAWWWCR
JASPAR_2022_fungi_CORE_m162_MA1434_1	NCU02182	cluster_1	JASPAR_2022_fungi_CORE	10	7.62	999	+VTGGGTW++	++wACCCAb+
JASPAR_2022_fungi_CORE_m49_MA0322_1	INO4	cluster_4	JASPAR_2022_fungi_CORE	10	9.16	266	gCATGTGAA+	+TTCACATGC
JASPAR_2022_fungi_CORE_m31_MA0300_1	GAT1	cluster_12	JASPAR_2022_fungi_CORE	11	8.05	101	++cyGATAAG+	+CTTATCRG++
JASPAR_2022_fungi_CORE_m126_MA0409_1	TYE7	cluster_7	JASPAR_2022_fungi_CORE	9	8.18	102	+TCACGTG+	+CACGTGA+
JASPAR_2022_fungi_CORE_m128_MA0411_1	UPC2	cluster_53	JASPAR_2022_fungi_CORE	8	6.02	101	+yrwACGA	TCGTWYR+
JASPAR_2022_fungi_CORE_m108_MA0390_1	STB3	cluster_33	JASPAR_2022_fungi_CORE	23	11.07	999	MMDRAGTGAAAAAWTTTRRAC++	++gtyyaaAwTTTTTCActyhkk
JASPAR_2022_fungi_CORE_m136_MA0420_1	ERT1	cluster_6	JASPAR_2022_fungi_CORE	13	7.93	100	+ayCGGAAy++++	++++RTTCCGRT+
JASPAR_2022_fungi_CORE_m178_MA0403_2	TBF1	cluster_37	JASPAR_2022_fungi_CORE	16	8.83	160	WWWKTTAGGGTTWDWW	wwhwAACCCTAAmwww
JASPAR_2022_fungi_CORE_m76_MA0354_1	PDR8	cluster_6	JASPAR_2022_fungi_CORE	13	8.50	101	++rCGGAGAT+++	+++ATCTCCGY++
JASPAR_2022_fungi_CORE_m140_MA0424_1	YER184C	cluster_6	JASPAR_2022_fungi_CORE	13	6.41	100	hTCCGGMa+++++	+++++TKCCGGAD
JASPAR_2022_fungi_CORE_m79_MA0357_1	PHO4	cluster_7	JASPAR_2022_fungi_CORE	9	7.63	998	+sCACGTGs	SCACGTGS+
JASPAR_2022_fungi_CORE_m12_MA0277_1	AZF1	cluster_32	JASPAR_2022_fungi_CORE	9	7.99	102	aAAARGAAa	TTTCYTTTT
JASPAR_2022_fungi_CORE_m78_MA0356_1	PHO2	cluster_27	JASPAR_2022_fungi_CORE	10	5.16	101	++++WAWTAW	wTAwTw++++
JASPAR_2022_fungi_CORE_m60_MA0334_1	MET32	cluster_10	JASPAR_2022_fungi_CORE	10	6.37	100	+++TGTGGCK	mGCCACa+++
JASPAR_2022_fungi_CORE_m142_MA0426_1	YHP1	cluster_27	JASPAR_2022_fungi_CORE	10	8.32	203	+++CAATTA+	+TAATTG+++
JASPAR_2022_fungi_CORE_m116_MA0398_1	SUM1	cluster_36	JASPAR_2022_fungi_CORE	9	6.41	100	awwATTTwt	AWAAATWWT
JASPAR_2022_fungi_CORE_m171_MA0312_2	HAP1	cluster_12	JASPAR_2022_fungi_CORE	11	8.82	56	TWTATCGGCH+	+dgCCGATAwa
JASPAR_2022_fungi_CORE_m131_MA0415_1	YAP1	cluster_16	JASPAR_2022_fungi_CORE	21	10.98	999	+mkktgmTTACGTAAkmycst	ASGRKMTTACGTAAKCAMMK+
JASPAR_2022_fungi_CORE_m143_MA0428_1	YKL222C	cluster_6	JASPAR_2022_fungi_CORE	13	7.30	101	+ATYTCCGTT+++	+++aACGGAraT+
JASPAR_2022_fungi_CORE_m101_MA0381_1	SKN7	cluster_8	JASPAR_2022_fungi_CORE	9	5.51	101	+MYGGCC++	++GGCCrk+
JASPAR_2022_fungi_CORE_m62_MA0336_1	MGA1	cluster_23	JASPAR_2022_fungi_CORE	21	8.47	999	wrsrhtAtAGAACAythhwwm	KWWDDARTGTTCTATADYSYW
JASPAR_2022_fungi_CORE_m122_MA0405_1	TEA1	cluster_20	JASPAR_2022_fungi_CORE	9	6.46	100	+AWGYSCGC	GCGsrCwt+
JASPAR_2022_fungi_CORE_m2_MA0267_1	ACE2	cluster_11	JASPAR_2022_fungi_CORE	8	6.60	100	+mCCAGCa	TGCTGGK+
JASPAR_2022_fungi_CORE_m27_MA0295_1	FHL1	cluster_9	JASPAR_2022_fungi_CORE	9	8.04	102	TKTGCGTC+	+GACGCAma
JASPAR_2022_fungi_CORE_m113_MA0395_1	STP2	cluster_62	JASPAR_2022_fungi_CORE	20	7.98	999	yrawygGyGCCGyrysackh	DMGTSRYRCGGCRCCRWTYR
JASPAR_2022_fungi_CORE_m141_MA0425_1	YGR067C	cluster_35	JASPAR_2022_fungi_CORE	16	7.11	101	++YVHHRRDGHGGGGY	rCCCCdChyyddbr++
JASPAR_2022_fungi_CORE_m20_MA0288_1	CUP9	cluster_31	JASPAR_2022_fungi_CORE	9	7.51	100	TGACAyAww	WWTRTGTCA
JASPAR_2022_fungi_CORE_m55_MA0329_1	MBP1	cluster_9	JASPAR_2022_fungi_CORE	9	5.05	100	+aCGCGwm+	+KWCGCGT+
JASPAR_2022_fungi_CORE_m39_MA0309_1	GZF3	cluster_12	JASPAR_2022_fungi_CORE	11	7.08	101	+++YSTTATCR	yGATAAsr+++
JASPAR_2022_fungi_CORE_m130_MA0414_1	XBP1	cluster_28	JASPAR_2022_fungi_CORE	7	6.19	101	yTCGArr	YYTCGAR
JASPAR_2022_fungi_CORE_m80_MA0358_1	PUT3	cluster_15	JASPAR_2022_fungi_CORE	10	7.29	101	CCCGGGaa++	++TTCCCGGG
JASPAR_2022_fungi_CORE_m123_MA0406_1	TEC1	cluster_54	JASPAR_2022_fungi_CORE	8	7.46	100	rCATTCYy	RRGAATGY
JASPAR_2022_fungi_CORE_m34_MA0304_1	GCR1	cluster_14	JASPAR_2022_fungi_CORE	8	7.99	2649	WGGAAGCY	RGCTTCCW
JASPAR_2022_fungi_CORE_m106_MA0388_1	SPT23	cluster_32	JASPAR_2022_fungi_CORE	9	6.76	251	rAAATsaA+	+TTSATTTY
JASPAR_2022_fungi_CORE_m11_MA0276_1	ASH1	cluster_21	JASPAR_2022_fungi_CORE	12	7.44	294	CCrrRTcrGG++	++CCYGAYYYGG
JASPAR_2022_fungi_CORE_m138_MA0422_1	URC2	cluster_6	JASPAR_2022_fungi_CORE	13	7.91	101	++yCGGAgwTAw+	+WTAWCTCCGR++
JASPAR_2022_fungi_CORE_m61_MA0335_1	MET4	cluster_10	JASPAR_2022_fungi_CORE	10	9.57	301	AaCTGTGG++	++CCACAGTT
JASPAR_2022_fungi_CORE_m144_MA0429_1	YLL054C	cluster_8	JASPAR_2022_fungi_CORE	9	5.93	100	+TCGGCCG+	+CGGccGa+
JASPAR_2022_fungi_CORE_m38_MA0308_1	GSM1	cluster_19	JASPAR_2022_fungi_CORE	21	9.27	999	wtyaarwAwCTCCGGArtwkw	WMWAYTCCGGAGWTWYTTRAW
JASPAR_2022_fungi_CORE_m160_MA1432_1	cre-1	cluster_1	JASPAR_2022_fungi_CORE	10	5.13	999	++BTSYGGGG	CCCCrsav++
JASPAR_2022_fungi_CORE_m16_MA0283_1	CHA4	cluster_18	JASPAR_2022_fungi_CORE	11	7.79	100	+++GGCGGRGw	WCYCCGCC+++
JASPAR_2022_fungi_CORE_m4_MA0269_1	AFT1	cluster_61	JASPAR_2022_fungi_CORE	21	9.44	999	ttacatAkTGCACCCsmwwkg	CMWWKSGGGTGCAMTATGTAA
JASPAR_2022_fungi_CORE_m19_MA0287_1	CUP2	cluster_48	JASPAR_2022_fungi_CORE	11	10.84	9	CAGCrrAAAwG	CWTTTYYGCTG
JASPAR_2022_fungi_CORE_m81_MA0360_1	RDR1	cluster_6	JASPAR_2022_fungi_CORE	13	8.29	101	+tGCGGAAm++++	++++KTTCCGCA+
JASPAR_2022_fungi_CORE_m56_MA0330_1	MBP1::SWI6	cluster_9	JASPAR_2022_fungi_CORE	9	6.81	23791	+wCGCGTy+	+RACGCGW+
JASPAR_2022_fungi_CORE_m172_MA0314_2	HAP3	cluster_34	JASPAR_2022_fungi_CORE	17	9.18	115	+++++kcTGATTGGyyc	GRRCCAATCAGM+++++
JASPAR_2022_fungi_CORE_m36_MA0306_1	GIS1	cluster_1	JASPAR_2022_fungi_CORE	10	6.93	100	+wCCCCTwww	WWWAGGGGW+
JASPAR_2022_fungi_CORE_m58_MA0332_1	MET28	cluster_10	JASPAR_2022_fungi_CORE	10	8.32	203	++CTGTGG++	++CCACAG++
JASPAR_2022_fungi_CORE_m93_MA0373_1	RPN4	cluster_10	JASPAR_2022_fungi_CORE	10	8.13	100	+++gGTGGCG	CGCCACC+++
JASPAR_2022_fungi_CORE_m17_MA0285_1	CRZ1	cluster_8	JASPAR_2022_fungi_CORE	9	5.76	101	GKGGCKKWG	cwmmGCCmC
JASPAR_2022_fungi_CORE_m99_MA0379_1	MOT2	cluster_53	JASPAR_2022_fungi_CORE	8	6.64	100	ATATA+++	+++TATAT
JASPAR_2022_fungi_CORE_m98_MA0378_1	SFP1	cluster_33	JASPAR_2022_fungi_CORE	23	8.68	999	++wywrdrAAAAwTTTTyywykg	CMRWRRAAAAWTTTTYHYWRW++
JASPAR_2022_fungi_CORE_m177_MA0382_2	SKO1	cluster_16	JASPAR_2022_fungi_CORE	21	9.76	267	++WMAATKACGTCATYRWW++	++wwyrATGACGTMAttkw++
JASPAR_2022_fungi_CORE_m73_MA0350_1	TOD6	cluster_5	JASPAR_2022_fungi_CORE	21	9.67	999	akbcwyasCTCATCGcsyywk	MWRRSGCGATGAGSTRWGVMT
JASPAR_2022_fungi_CORE_m35_MA0305_1	GCR2	cluster_14	JASPAR_2022_fungi_CORE	8	7.04	279	DGGAAGC+	+gCTTCCh
JASPAR_2022_fungi_CORE_m29_MA0297_1	FKH2	cluster_17	JASPAR_2022_fungi_CORE	16	9.32	101	+++++++GTAAACA++	++TGTTTAC+++++++
JASPAR_2022_fungi_CORE_m1_MA0266_1	ABF2	cluster_42	JASPAR_2022_fungi_CORE	7	7.39	101	sTCTAGA	TCTAGAS
JASPAR_2022_fungi_CORE_m119_MA0401_1	SWI4	cluster_9	JASPAR_2022_fungi_CORE	9	8.27	101	+TTTCGCGT	aCGCGAAa+
JASPAR_2022_fungi_CORE_m86_MA0366_1	RGM1	cluster_1	JASPAR_2022_fungi_CORE	10	6.23	100	++CCCCT+++	+++AGGGG++
JASPAR_2022_fungi_CORE_m88_MA0368_1	RIM101	cluster_24	JASPAR_2022_fungi_CORE	7	8.54	100	CTTGGCR	yGCCAAG
JASPAR_2022_fungi_CORE_m75_MA0353_1	PDR3	cluster_18	JASPAR_2022_fungi_CORE	11	11.09	203	+TCCGCGGA++	++TCCGCGGA+
JASPAR_2022_fungi_CORE_m103_MA0385_1	SOK2	cluster_13	JASPAR_2022_fungi_CORE	11	5.53	101	acmTGCAkgma	TKCMTGCAKGT
JASPAR_2022_fungi_CORE_m14_MA0280_1	CAT8	cluster_6	JASPAR_2022_fungi_CORE	13	6.09	100	++CCGGar+++++	+++++YTCCGG++
JASPAR_2022_fungi_CORE_m23_MA0291_1	DAL82	cluster_20	JASPAR_2022_fungi_CORE	9	6.47	101	awwrYGCGc	GCGCRYWWT
JASPAR_2022_fungi_CORE_m44_MA0317_1	HCM1	cluster_17	JASPAR_2022_fungi_CORE	16	6.12	101	+++++++rwmAACAa+	+TTGTTKWY+++++++
JASPAR_2022_fungi_CORE_m150_MA0435_1	YPR015C	cluster_59	JASPAR_2022_fungi_CORE	20	11.58	999	tkwaraCGTAAATCmtwwhh	DDWWAKGATTTACGTYTWMA
JASPAR_2022_fungi_CORE_m146_MA0431_1	TDA9	cluster_1	JASPAR_2022_fungi_CORE	10	7.55	101	+aCCCCdCwy	RWGHGGGGT+
JASPAR_2022_fungi_CORE_m124_MA0407_1	THI2	cluster_65	JASPAR_2022_fungi_CORE	15	14.99	1348	GGmAACyswWAGArC	GYTCTWWSRGTTKCC
JASPAR_2022_fungi_CORE_m66_MA0340_1	MOT3	cluster_38	JASPAR_2022_fungi_CORE	7	6.53	203	hAGGyA+	+TRCCTD
JASPAR_2022_fungi_CORE_m173_MA0347_2	NRG1	cluster_37	JASPAR_2022_fungi_CORE	16	8.88	48	+++dwmAGGGTCCdwt	AWHGGACCCTKWH+++
JASPAR_2022_fungi_CORE_m175_MA0359_2	RAP1	cluster_60	JASPAR_2022_fungi_CORE	15	10.62	336	drTGTaTGGGTGTww	WWACACCCATACAYH
JASPAR_2022_fungi_CORE_m96_MA0376_1	RTG3	cluster_26	JASPAR_2022_fungi_CORE	20	9.03	999	rkmkkakCACGTGmyyrvwc	GWBYRRKCACGTGMTMMKMY
JASPAR_2022_fungi_CORE_m117_MA0399_1	SUT1	cluster_18	JASPAR_2022_fungi_CORE	11	5.19	272	+++cGCGGgG+	+CCCCGCG+++
JASPAR_2022_fungi_CORE_m18_MA0286_1	CST6	cluster_22	JASPAR_2022_fungi_CORE	9	8.04	101	rTGACGTma	TKACGTCAY
JASPAR_2022_fungi_CORE_m57_MA0331_1	MCM1	cluster_21	JASPAR_2022_fungi_CORE	12	8.18	16231	CCyawTyrGGAA	TTCCYRAWTRGG
JASPAR_2022_fungi_CORE_m145_MA0430_1	YLR278C	cluster_6	JASPAR_2022_fungi_CORE	13	7.34	100	++WACTCCGR+++	+++yCGGAGTw++
JASPAR_2022_fungi_CORE_m41_MA0311_1	HAL9	cluster_6	JASPAR_2022_fungi_CORE	13	6.27	99	+++YTCCG+++++	+++++CGGAr+++
JASPAR_2022_fungi_CORE_m149_MA0434_1	YPR013C	cluster_2	JASPAR_2022_fungi_CORE	11	7.52	100	++KGATYKRCR	yGymrATCm++
JASPAR_2022_fungi_CORE_m170_MA0303_2	GCN4	cluster_25	JASPAR_2022_fungi_CORE	11	8.12	90	raTGASTCAty	RATGASTCATY
JASPAR_2022_fungi_CORE_m168_MA0281_2	CBF1	cluster_26	JASPAR_2022_fungi_CORE	20	10.00	256	+++wrrtCACGTGAyhwd++	++HWDRTCACGTGAYYW+++
JASPAR_2022_fungi_CORE_m137_MA0421_1	NSI1	cluster_15	JASPAR_2022_fungi_CORE	10	11.31	2028	KCCGGGTAAA	TTTACCCGGm
JASPAR_2022_fungi_CORE_m13_MA0278_1	BAS1	cluster_39	JASPAR_2022_fungi_CORE	21	10.98	999	kcwyrgCCvGAGTCArdwyra	TYRWHYTGACTCBGGCYRWGM
JASPAR_2022_fungi_CORE_m157_MA0328_2	MATALPHA2	cluster_4	JASPAR_2022_fungi_CORE	10	7.45	1000	+CrTGTAaw+	+WTTACAYG+
JASPAR_2022_fungi_CORE_m84_MA0364_1	REI1	cluster_1	JASPAR_2022_fungi_CORE	10	7.98	100	++TCAGGGG+	+CCCCTGa++
JASPAR_2022_fungi_CORE_m24_MA0292_1	ECM22	cluster_6	JASPAR_2022_fungi_CORE	13	6.48	100	+TCCGGAD+++++	+++++hTCCGGA+
JASPAR_2022_fungi_CORE_m87_MA0367_1	RGT1	cluster_6	JASPAR_2022_fungi_CORE	13	6.78	101	++YCGGAWWAWYT	arwTwwTCCGr++
JASPAR_2022_fungi_CORE_m3_MA0268_1	ADR1	cluster_1	JASPAR_2022_fungi_CORE	10	5.87	100	+aCCCCam++	++KTGGGGT+
JASPAR_2022_fungi_CORE_m85_MA0365_1	RFX1	cluster_41	JASPAR_2022_fungi_CORE	8	7.82	100	sGTTRCyA	TRGYAACS
JASPAR_2022_fungi_CORE_m65_MA0339_1	MIG3	cluster_1	JASPAR_2022_fungi_CORE	10	6.26	101	++CCCCrCa+	+TGYGGGG++
JASPAR_2022_fungi_CORE_m147_MA0432_1	YNR063W	cluster_6	JASPAR_2022_fungi_CORE	13	8.28	102	++tCGGAGAw+++	+++WTCTCCGA++
JASPAR_2022_fungi_CORE_m82_MA0361_1	RDS1	cluster_8	JASPAR_2022_fungi_CORE	9	6.77	101	+BCGGCCG+	+CGGCCGv+
JASPAR_2022_fungi_CORE_m77_MA0355_1	PHD1	cluster_13	JASPAR_2022_fungi_CORE	11	5.56	100	msmTGCAkcm+	+KGMTGCAKSK
JASPAR_2022_fungi_CORE_m59_MA0333_1	MET31	cluster_10	JASPAR_2022_fungi_CORE	10	7.87	101	+CGCCACASY	rstGTGGCG+
JASPAR_2022_fungi_CORE_m95_MA0375_1	RSC30	cluster_18	JASPAR_2022_fungi_CORE	11	6.97	100	+++SGCGCGSG	csCGCGCS+++
JASPAR_2022_fungi_CORE_m164_MA1436_1	nuc-1	cluster_7	JASPAR_2022_fungi_CORE	9	8.55	999	+KCACGTGK	mCACGTGm+
JASPAR_2022_fungi_CORE_m115_MA0397_1	STP4	cluster_3	JASPAR_2022_fungi_CORE	11	8.10	101	+gmTAGCGCa+	+TGCGCTAKC+
JASPAR_2022_fungi_CORE_m111_MA0393_1	STE12	cluster_30	JASPAR_2022_fungi_CORE	8	7.15	29965	+TGAAACr	YGTTTCA+
JASPAR_2022_fungi_CORE_m139_MA0423_1	YER130C	cluster_1	JASPAR_2022_fungi_CORE	10	7.90	100	+mCCCCTwTh	DAWAGGGGK+
JASPAR_2022_fungi_CORE_m21_MA0289_1	DAL80	cluster_12	JASPAR_2022_fungi_CORE	11	7.61	101	+++cGATAAG+	+CTTATCG+++
JASPAR_2022_fungi_CORE_m53_MA0326_1	MAC1	cluster_57	JASPAR_2022_fungi_CORE	8	9.17	1759	TTTGCTCr	YGAGCAAA
JASPAR_2022_fungi_CORE_m83_MA0362_1	RDS2	cluster_28	JASPAR_2022_fungi_CORE	7	7.06	101	mTCGGGG	CCCCGAK
JASPAR_2022_fungi_CORE_m7_MA0272_1	ARG81	cluster_25	JASPAR_2022_fungi_CORE	11	8.08	279	+rTGACTCh++	++DGAGTCAY+
JASPAR_2022_fungi_CORE_m105_MA0387_1	SPT2	cluster_27	JASPAR_2022_fungi_CORE	10	7.77	211	wwTTRavkAr	YTMBTYAAWW
JASPAR_2022_fungi_CORE_m94_MA0374_1	RSC3	cluster_18	JASPAR_2022_fungi_CORE	11	5.53	101	+++CGCGcss+	+SSGCGCG+++
JASPAR_2022_fungi_CORE_m6_MA0271_1	ARG80	cluster_25	JASPAR_2022_fungi_CORE	11	6.30	301	++GMGTCW+++	+++wGACkC++
JASPAR_2022_fungi_CORE_m47_MA0320_1	IME1	cluster_18	JASPAR_2022_fungi_CORE	11	9.59	301	++CTCSGCGG+	+CCGCsGAG++
JASPAR_2022_fungi_CORE_m179_MA0412_2	UME6	cluster_40	JASPAR_2022_fungi_CORE	17	10.92	218	++wwwTAGCCGCCsArv	BYTSGGCGGCTAWWW++
JASPAR_2022_fungi_CORE_m10_MA0275_1	ASG1	cluster_6	JASPAR_2022_fungi_CORE	13	6.31	100	++CCGGAw+++++	+++++WTCCGG++
JASPAR_2022_fungi_CORE_m110_MA0392_1	STB5	cluster_6	JASPAR_2022_fungi_CORE	13	6.25	101	+++TAACMCCG++	++CGGkgtTA+++
JASPAR_2022_fungi_CORE_m112_MA0394_1	STP1	cluster_18	JASPAR_2022_fungi_CORE	11	7.31	279	+++yGCGGCkb	VMGCCGCR+++
JASPAR_2022_fungi_CORE_m48_MA0321_1	INO2	cluster_4	JASPAR_2022_fungi_CORE	10	8.88	275	GCATGTGAA+	+TTCACATGC
JASPAR_2022_fungi_CORE_m161_MA1433_1	msn-1	cluster_1	JASPAR_2022_fungi_CORE	10	6.60	999	+cCCCCTkw+	+WMAGGGGG+
JASPAR_2022_fungi_CORE_m153_MA0438_1	YRM1	cluster_6	JASPAR_2022_fungi_CORE	13	7.38	100	++ATTTCCGT+++	+++aCGGAaAT++
JASPAR_2022_fungi_CORE_m127_MA0410_1	UGA3	cluster_18	JASPAR_2022_fungi_CORE	11	7.64	100	++TSCCGCSS+	+ssGCGGSA++
JASPAR_2022_fungi_CORE_m104_MA0386_1	SPT15	cluster_46	JASPAR_2022_fungi_CORE	21	10.20	999	vwhtaGrwATATATAtwsrwk	MWYSWATATATATWYCTADWB
JASPAR_2022_fungi_CORE_m69_MA0343_1	NDT80	cluster_45	JASPAR_2022_fungi_CORE	21	10.10	999	hytcckgmCACAAAAacsvaa	TTBSGTTTTTGTGKCMGGARD
JASPAR_2022_fungi_CORE_m64_MA0338_1	MIG2	cluster_1	JASPAR_2022_fungi_CORE	10	6.37	101	++CCCCrCa+	+TGYGGGG++
JASPAR_2022_fungi_CORE_m54_MA0327_1	HMRA1	cluster_31	JASPAR_2022_fungi_CORE	9	9.01	203	++rCACAAT	ATTGTGY++
JASPAR_2022_fungi_CORE_m174_MA0352_2	PDR1	cluster_56	JASPAR_2022_fungi_CORE	14	9.61	144	skTTCCrCGGAAvr	YBTTCCGYGGAAMS
JASPAR_2022_fungi_CORE_m156_MA0441_1	ZMS1	cluster_1	JASPAR_2022_fungi_CORE	10	7.21	101	WGCGGGGWA+	+twCCCCgCw
JASPAR_2022_fungi_CORE_m22_MA0290_1	DAL81	cluster_52	JASPAR_2022_fungi_CORE	19	26.34	203	AAAAGCCGCGGGCGGGATT	AATCCCGCCCGCGGCTTTT
JASPAR_2022_fungi_CORE_m125_MA0408_1	TOS8	cluster_4	JASPAR_2022_fungi_CORE	10	7.13	100	++TTTGACAK	mTGTCAaa++
JASPAR_2022_fungi_CORE_m129_MA0413_1	USV1	cluster_58	JASPAR_2022_fungi_CORE	20	10.99	999	dwwttmCCCCTGAAyttkks	SMMAARTTCAGGGGKAAWWH
JASPAR_2022_fungi_CORE_m148_MA0433_1	YOX1	cluster_27	JASPAR_2022_fungi_CORE	10	8.04	101	++TTAATTAR	yTAATTaa++
JASPAR_2022_fungi_CORE_m30_MA0299_1	GAL4	cluster_64	JASPAR_2022_fungi_CORE	15	7.99	3221	CGGrsvAsagtrytC	GARYACTSTBSYCCG
JASPAR_2022_fungi_CORE_m68_MA0342_1	MSN4	cluster_1	JASPAR_2022_fungi_CORE	10	6.43	100	++CCCCT+++	+++AGGGG++
JASPAR_2022_fungi_CORE_m43_MA0316_1	HAP5	cluster_34	JASPAR_2022_fungi_CORE	17	9.28	4710	tssgmkCTsATTGGy++	++RCCAATSAGMKCSSA
JASPAR_2022_fungi_CORE_m135_MA0419_1	YAP7	cluster_17	JASPAR_2022_fungi_CORE	16	9.53	11274	+++aTTAGTAAkCa++	++TGMTTACTAAT+++
JASPAR_2022_fungi_CORE_m118_MA0400_1	SUT2	cluster_19	JASPAR_2022_fungi_CORE	21	10.06	999	+wkrwtrAASTCCGArmwwbw	WVWWKYTCGGASTTYAWYMW+
JASPAR_2022_fungi_CORE_m152_MA0437_1	YPR196W	cluster_6	JASPAR_2022_fungi_CORE	13	6.67	101	+++CGGRRAAWY+	+rWTTyyCCG+++
JASPAR_2022_fungi_CORE_m26_MA0294_1	EDS1	cluster_6	JASPAR_2022_fungi_CORE	13	7.76	101	+++cGGAAaAAt+	+ATTTTTCCG+++
JASPAR_2022_fungi_CORE_m165_MA1437_1	wc-1	cluster_2	JASPAR_2022_fungi_CORE	11	7.88	999	+TCGATCGK++	++mCGATCGa+
JASPAR_2022_fungi_CORE_m151_MA0436_1	YPR022C	cluster_1	JASPAR_2022_fungi_CORE	10	7.46	101	++SGTGGGG+	+cCCCACs++
JASPAR_2022_fungi_CORE_m90_MA0370_1	RME1	cluster_51	JASPAR_2022_fungi_CORE	10	6.86	271	YyyAAAGGaA	TTCCTTTRRR
JASPAR_2022_fungi_CORE_m109_MA0391_1	STB4	cluster_6	JASPAR_2022_fungi_CORE	13	7.89	100	+yTCGGAA+++++	+++++TTCCGAR+
JASPAR_2022_fungi_CORE_m51_MA0324_1	LEU3	cluster_21	JASPAR_2022_fungi_CORE	12	8.50	101	SCGSWDMMGG++	++CCkkhwsCGS
JASPAR_2022_fungi_CORE_m25_MA0293_1	ECM23	cluster_2	JASPAR_2022_fungi_CORE	11	5.20	101	mmAGATCtwam	KTWAGATCTKK
JASPAR_2022_fungi_CORE_m134_MA0418_1	YAP6	cluster_16	JASPAR_2022_fungi_CORE	21	7.78	999	sgkywgmTTAyGTaAkcrrc+	+GYYGMTTACRTAAKCWRMCS
JASPAR_2022_fungi_CORE_m155_MA0440_1	ZAP1	cluster_50	JASPAR_2022_fungi_CORE	15	15.27	279	ACCyTmArGGTyrTG	CAYRACCYTKARGGT
JASPAR_2022_fungi_CORE_m163_MA1435_1	nit-4	cluster_18	JASPAR_2022_fungi_CORE	11	8.74	999	CYCCGCGGAR+	+yTCCGCGGrg
JASPAR_2022_fungi_CORE_m89_MA0369_1	RLM1	cluster_47	JASPAR_2022_fungi_CORE	18	14.29	42	vrWTCTAwwwATAGmyyv	BRRKCTATWWWTAGAWYB
JASPAR_2022_fungi_CORE_m32_MA0301_1	GAT3	cluster_2	JASPAR_2022_fungi_CORE	11	5.18	100	++aGATCyamm	KKTRGATCT++
JASPAR_2022_fungi_CORE_m133_MA0417_1	YAP5	cluster_38	JASPAR_2022_fungi_CORE	7	5.88	281	+ArrCAT	ATGYYT+
JASPAR_2022_fungi_CORE_m52_MA0325_1	LYS14	cluster_6	JASPAR_2022_fungi_CORE	13	8.00	101	++AATTCCGG+++	+++cCGGAATt++
JASPAR_2022_fungi_CORE_m107_MA0389_1	SRD1	cluster_2	JASPAR_2022_fungi_CORE	11	5.77	100	++aGATCTmc+	+GKAGATCT++
JASPAR_2022_fungi_CORE_m46_MA0319_1	HSF1	cluster_30	JASPAR_2022_fungi_CORE	8	7.00	101	ATGGAAca	TGTTCCAT
JASPAR_2022_fungi_CORE_m45_MA0318_1	HMRA2	cluster_4	JASPAR_2022_fungi_CORE	10	7.42	101	+crTGTAAw+	+WTTACAYG+
JASPAR_2022_fungi_CORE_m50_MA0323_1	IXR1	cluster_35	JASPAR_2022_fungi_CORE	16	14.29	301	AArCCGGrAGCGGkG+	+CMCCGCTYCCGGYTT
JASPAR_2022_fungi_CORE_m9_MA0274_1	ARR1	cluster_27	JASPAR_2022_fungi_CORE	10	6.23	234	AyyTRAAT++	++ATTYARRT
JASPAR_2022_fungi_CORE_m159_MA1431_1	rst2	cluster_1	JASPAR_2022_fungi_CORE	10	6.26	999	waCCCCgCwy	RWGCGGGGTW
JASPAR_2022_fungi_CORE_m132_MA0416_1	YAP3	cluster_22	JASPAR_2022_fungi_CORE	9	8.59	100	aTTACGTa+	+TACGTAAT
JASPAR_2022_fungi_CORE_m63_MA0337_1	MIG1	cluster_1	JASPAR_2022_fungi_CORE	10	6.34	100	+mCCCCrs++	++SYGGGGK+
JASPAR_2022_fungi_CORE_m167_MA0279_2	CAD1	cluster_17	JASPAR_2022_fungi_CORE	16	9.52	87	HKKATTAGTAAKCAAW	wttGmTTACTAATmmd
JASPAR_2022_fungi_CORE_m37_MA0307_1	GLN3	cluster_12	JASPAR_2022_fungi_CORE	11	5.45	100	++++YWATC++	++GATWr++++
JASPAR_2022_fungi_CORE_m33_MA0302_1	GAT4	cluster_2	JASPAR_2022_fungi_CORE	11	6.63	101	ahAGATCyama	TKTRGATCTDT
JASPAR_2022_fungi_CORE_m100_MA0380_1	SIP4	cluster_6	JASPAR_2022_fungi_CORE	13	6.02	101	+YCCGGRR+++++	+++++yYCCGgr+

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Exported files

File	Description
Pairwise comparison	This table shows the pairwise comparison between all the input motifs using different metrics. This is the compare-matrices result.
Matrix description	This table shows information of each input motif.
Cluster-wise Motif Files [zip]	One TRANSFAC file is generated for each cluster including all the input motifs grouped in the corresponding cluster.
Root motifs	A file with the root matrix of each cluster.
Motif collections per cluster	A tab separated file containing the counts of motif of each collection on each cluster.
Clusters	A tab separated file containing the clusters and their correspondng motifs.
Central motifs IDs	A tab separated file containing the central motif, that one who is the most similar to all the others motif in the same cluster.
Central motifs (in TRANSFAC format)	A transfac file containing the central motif, that one who is the most similar to all the others motif within the same cluster.
Input motifs	The input motifs analyzed with matrix-clustering.

RSAT - matrix-clustering result

Analysis: JASPAR_2022_fungi_CORE (04/10/2021 19:33)

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Results Summary

Clusters Summary Table

Individual Cluster View

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Definitions

Individual Motif View

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Exported files