| Fork head/winged helix factors::2 | FoxA-b,FoxB | PDF |
| T-Box factors::1 | Brachyury,Tbox-a,Tbox-b,Tbx15/18/22,Tbx2/3 | PDF |
| Basic helix-loop-helix factors (bHLH)::2 | AP4,Atoh7 | PDF |
| Basic leucine zipper factors (bZIP)::2 | Creb1,Fos-b | PDF |
| Fork head/winged helix factors::3 | FoxI-c,FoxO | PDF |
| Homeo domain factors::2 | Six3/6 | PDF |
| Fork head/winged helix factors::4 | FoxA-a | PDF |
| Fork head/winged helix factors::5 | FoxQ | PDF |
| Homeo domain factors::3 | Gsx | PDF |
| Rel homology region (RHR) factors::1 | NFkb | PDF |
| Homeo domain factors::1 | Atbf,Bsx,Dlx-b,Dlx-c,Emx,Hex,Hmbox1,Hnf1,Hox1,Hox3,Hox4,Hox5,Isx,Lhx3/4,Lmx-b,Meox,Mnx,Msx,Nk-1,Nk-3,Nkx3,Noto,Otp,Prop,Rax,Tlx,Uncx-b | PDF |
| Rel homology region (RHR) factors::2 | Rel | PDF |
| Homeo domain factors::4 | Otx | PDF |
| Basic leucine zipper factors (bZIP)::3 | Cebpg | PDF |
| Heat shock factors::1 | Hsf1-2-4 | PDF |
| Tryptophan cluster factors::2 | Irf-b | PDF |
| C2H2 zinc finger factors::2 | YY1-2 | PDF |
| C2H2 zinc finger factors::3 | Macho-1 | PDF |
| Fork head/winged helix factors::1 | FoxD-b,FoxE,FoxF,FoxG,FoxI-a,FoxI-b,FoxK,FoxL2,FoxM | PDF |
| Tryptophan cluster factors::1 | Erf-a,Etv1/4/5,Fli-Erg-a,Fli-Erg-b,Fli-Erg-c | PDF |
| High-mobility group (HMG) domain factors::1 | SoxB1,SoxB2,SoxC,SoxF | PDF |
| Basic leucine zipper factors (bZIP)::1 | large-Maf,small-Maf | PDF |
| Basic helix-loop-helix factors (bHLH)::1 | Hes-b,Hes-c,Hey,Max,Mitf,Usf | PDF |
| C2H2 zinc finger factors::1 | Klf15,Klf3/8/12,Klf5-like,Klf6-7-like | PDF |
| Other C4 zinc finger-type factors::1 | GATA-a,GATA1/2/3 | PDF |
| C2H2 zinc finger factors&Basic helix-loop-helix factors (bHLH)::1 | Snail,Tcf3-4-12 | PDF |