matrix-clustering JASPAR_2022_plants

matrix-clustering  -v 2 -matrix JASPAR_2022_plants_CORE data/motifs/plants/JASPAR_2022_CORE_plants.tf tf -hclust_method average -calc sum -title 'JASPAR 2022 plants CORE' -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -label_in_tree name -return json -quick -radial_tree_only -o results/JASPAR_2022_matrix_clustering/plants/CORE/radial_trees/JASPAR_2022_matrix_clustering_plants_CORE -ID_link_color_table data/annotation_tables/plants/CORE/JASPAR_2022_plants_CORE_annotations_with_colours.tsv

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

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Root motifs

Complete results [zip]

Parameters used

Linkage method

Similarity metric

Thresholds to partition the tree

656

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average

Ncor

Ncor = 0.4
cor = 0.6

RSAT - matrix-clustering result

Analysis: JASPAR_2022_plants_CORE (05/10/2021 16:16)

Command

Results Summary

Radial Tree